NP_083996.1 has 350 amino acids
Query: DUF3456 [M=150]
Accession: PF11938.12
Description: TLR4 regulator and MIR-interacting MSAP
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.2e-13 36.5 2.3 1e-07 18.6 0.0 2.8 2 NP_083996.1
Domain annotation for each sequence (and alignments):
>> NP_083996.1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 18.6 0.0 1e-07 1e-07 2 62 .. 29 83 .. 28 85 .. 0.79
2 ! 16.1 1.3 6e-07 6e-07 112 150 .] 86 125 .. 83 125 .. 0.93
Alignments for each domain:
== domain 1 score: 18.6 bits; conditional E-value: 1e-07
DUF3456 2 CeaCkaladeleealskvkpkkevdvggfrldkkgkrkkkkikyakSelrltelleevCek 62
C+ C++l+d++++ ++++++k+ g+ + ++k ky+ Se+rl+e++e++C++
NP_083996.1 29 CQRCRTLVDKFNQGMANTARKN-FGGGN-----TAWEEKTLSKYEFSEIRLLEIMEGLCDS 83
999************7776654.43444.....333457899*****************97 PP
== domain 2 score: 16.1 bits; conditional E-value: 6e-07
DUF3456 112 kaCerlvEeyEdeieelykkeqee.edlekkLCserskeC 150
+ C++l+E++E+++e++ ++ ++e +l ++ C + k+C
NP_083996.1 86 FECNQLLEQQEEQLEAWWQTLKKEhPNLFEWFCVHTLKAC 125
78********************999********9888877 PP
Or compare NP_083996.1 to CDD or PaperBLAST