Q96HD1 has 420 amino acids
Query: DUF3456 [M=151]
Accession: PF11938.11
Description: TLR4 regulator and MIR-interacting MSAP
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
4.5e-16 45.9 1.9 3.9e-09 23.3 0.0 2.5 2 Q96HD1
Domain annotation for each sequence (and alignments):
>> Q96HD1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 23.3 0.0 3.9e-09 3.9e-09 2 62 .. 46 100 .. 45 102 .. 0.78
2 ! 22.1 0.5 9.4e-09 9.4e-09 112 151 .] 102 142 .. 99 142 .. 0.93
Alignments for each domain:
== domain 1 score: 23.3 bits; conditional E-value: 3.9e-09
DUF3456 2 CeaCkavadeleealsktdpkkevdvggfrldkkgkrkkkkikyakSElrltellenvCek 62
C+ C+ ++d++++ l++t + + f +++ ++++ ky+ SE+rl+e+le+vC+k
Q96HD1 46 CHTCRGLVDSFNKGLERTIRDN------FGGGNTAWEEENLSKYKDSETRLVEVLEGVCSK 100
99*************7665443......22233444557899*****************97 PP
== domain 2 score: 22.1 bits; conditional E-value: 9.4e-09
DUF3456 112 kkaCerlveeyEdeieelykkeqee.eelekkLCeersklC 151
++ C+rl+e E+ +e++ +++q+e +l ++LC++ klC
Q96HD1 102 DFECHRLLELSEELVESWWFHKQQEaPDLFQWLCSDSLKLC 142
689********************************988888 PP
Or compare Q96HD1 to CDD or PaperBLAST