Q96HD1 has 420 amino acids
Query: DUF3456 [M=150]
Accession: PF11938.12
Description: TLR4 regulator and MIR-interacting MSAP
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.8e-16 46.0 1.2 4e-09 23.2 0.0 2.5 2 Q96HD1
Domain annotation for each sequence (and alignments):
>> Q96HD1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 23.2 0.0 4e-09 4e-09 2 63 .. 46 101 .. 45 103 .. 0.79
2 ! 21.8 0.5 1.1e-08 1.1e-08 111 150 .] 102 142 .. 99 142 .. 0.94
Alignments for each domain:
== domain 1 score: 23.2 bits; conditional E-value: 4e-09
DUF3456 2 CeaCkaladeleealskvkpkkevdvggfrldkkgkrkkkkikyakSelrltelleevCekm 63
C+ C+ l+d++++ l+++ + + f ++ ++++ ky+ Se+rl+e+le+vC+k
Q96HD1 46 CHTCRGLVDSFNKGLERTIRDN------FGGGNTAWEEENLSKYKDSETRLVEVLEGVCSKS 101
99*************6654433......33344555568899*****************985 PP
== domain 2 score: 21.8 bits; conditional E-value: 1.1e-08
DUF3456 111 kkaCerlvEeyEdeieelykkeqee.edlekkLCserskeC 150
++ C+rl+E E+ +e++ +++q+e dl ++LCs+ k+C
Q96HD1 102 DFECHRLLELSEELVESWWFHKQQEaPDLFQWLCSDSLKLC 142
579********************************998888 PP
Or compare Q96HD1 to CDD or PaperBLAST