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Align XP_020271947.1 to PF11938 (DUF3456)

XP_020271947.1 has 300 amino acids

Query:       DUF3456  [M=150]
Accession:   PF11938.12
Description: TLR4 regulator and MIR-interacting MSAP
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.2e-09   22.6   9.9    1.8e-07   17.8   9.9    3.0  1  XP_020271947.1  


Domain annotation for each sequence (and alignments):
>> XP_020271947.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   17.8   9.9   1.8e-07   1.8e-07      36     150 .]      56     161 ..      40     161 .. 0.75

  Alignments for each domain:
  == domain 1  score: 17.8 bits;  conditional E-value: 1.8e-07
         DUF3456  36 gkrkkkkikyakSelrltelleevCekmldYnlhkekktskrtlkrlasrkgvkvel.gikyelwdedsaevnkslkkaCerlvEeyEdeieely 129
                     +k++ +  ++++Se  ++e+ e+vC+      l+ke+ +   ++     +kg+k+el +   e +   ++e  k++++aC++++   + ++ e++
  XP_020271947.1  56 EKKQAQISPKKVSEYQIIEIAENVCN------LKKEEADWILQIDI--VEKGDKLELvEQGTEGL--CNSEC-KTIERACQEIIGYSDTDVAEFV 139
                     44456677899**************6......55555554433332..23566666632223333..23577.99******************** PP

         DUF3456 130 kkeqee.edlekkLCserskeC 150
                     +k++ + ++l++ LC+++s++C
  XP_020271947.1 140 YKHRPSvDKLANVLCKDLSDAC 161
                     ********************99 PP



Or compare XP_020271947.1 to CDD or PaperBLAST