PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS71651 to PF11944 (DUF3461)

VIMSS71651 has 128 amino acids

Query:       DUF3461  [M=125]
Accession:   PF11944.12
Description: Protein of unknown function (DUF3461)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence   Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.9e-60  186.4   2.4    1.1e-59  186.3   2.4    1.0  1  VIMSS71651  


Domain annotation for each sequence (and alignments):
>> VIMSS71651  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  186.3   2.4   1.1e-59   1.1e-59       1     125 []       1     125 [.       1     125 [. 1.00

  Alignments for each domain:
  == domain 1  score: 186.3 bits;  conditional E-value: 1.1e-59
     DUF3461   1 myehLksigitepdeierytLrqeaeadiLkiyfkkekgellaksvkfkfprqrkkilvdsgseeyknvseinatLrqvldeLdkltekekaeadikkk 99 
                 my++Lks+git+p+ei+ry+Lrqea++diLkiyf+k+kge++aksvkfk+prqrk++  d   + yk+v+ei+++Lr+++deLd++ +++++e+d+k+k
  VIMSS71651   1 MYDNLKSLGITNPEEIDRYSLRQEANNDILKIYFQKDKGEFFAKSVKFKYPRQRKTVVADGVGQGYKEVQEISPNLRYIIDELDQICQRDRSEVDLKRK 99 
                 9************************************************************************************************** PP

     DUF3461 100 lLedlkhlervvqdkikeierdlekl 125
                 +L+dl+hle+vv++ki+eie+dlekl
  VIMSS71651 100 ILDDLRHLESVVTNKISEIEADLEKL 125
                 ************************97 PP



Or compare VIMSS71651 to CDD or PaperBLAST