NP_001307513.1 has 776 amino acids
Query: DUF3504 [M=162]
Accession: PF12012.12
Description: Domain of unknown function (DUF3504)
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.3e-67 213.1 0.5 1.3e-67 213.1 0.5 2.1 2 NP_001307513.1
Domain annotation for each sequence (and alignments):
>> NP_001307513.1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.3 0.2 0.22 0.22 62 82 .. 89 109 .. 52 139 .. 0.55
2 ! 213.1 0.5 1.3e-67 1.3e-67 2 161 .. 600 758 .. 599 759 .. 0.95
Alignments for each domain:
== domain 1 score: -2.3 bits; conditional E-value: 0.22
DUF3504 62 eketylrylep...ekkaeakkrk 82
++e+ +++++p + + + +
NP_001307513.1 89 QQEQQIQVQQPqqvQ---VQVQVQ 109
344445555442111...111112 PP
== domain 2 score: 213.1 bits; conditional E-value: 1.3e-67
DUF3504 2 vsrveEeeLWeskqLgadsPivLLntllyfntkyfnlrtveehlkLsfsnverqskknpr...eketylrylepekkaeakkrkkeeedenkvve 93
s+v+Ee+LWe+kqLga+sP++LL+tl++fntkyf l+tv++h+kL+fs+v rq+kknp+ +k+t++ryl+ +++ +k ++d ++ e
NP_001307513.1 600 PSHVTEEMLWECKQLGAHSPSTLLTTLMFFNTKYFLLKTVDQHMKLAFSKVLRQTKKNPSnpkDKSTSIRYLKA--LGIHQTGQKVTDD--MYAE 690
699********************************************************99999*********9..5555666666666..8*** PP
DUF3504 94 qaensenplrCpvkLyelylskcPesvkerkdvFYlqpeksvvpesplWyssqplgkesLesmlkril 161
q+en+enplrCp+kLy++yl+kcP+svk r+d+FYl+pe++v+p+sp+Wys qp+++e++ +ml+ril
NP_001307513.1 691 QTENPENPLRCPIKLYDFYLFKCPQSVKGRNDTFYLTPEPVVAPNSPIWYSVQPISREQMGQMLTRIL 758
*******************************************************************8 PP
Or compare NP_001307513.1 to CDD or PaperBLAST