PaperBLAST – Find papers about a protein or its homologs

 

Align SwissProt::Q9HF61 to PF12015 (Bud3_N)

SwissProt::Q9HF61 has 1478 amino acids

Query:       Bud3_N  [M=182]
Accession:   PF12015.12
Description: Bud3, N-terminal
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------          -----------
    3.3e-72  228.1   0.0    6.3e-72  227.2   0.0    1.4  1  SwissProt::Q9HF61  


Domain annotation for each sequence (and alignments):
>> SwissProt::Q9HF61  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  227.2   0.0   6.3e-72   6.3e-72      10     182 .]      27     189 ..      18     189 .. 0.97

  Alignments for each domain:
  == domain 1  score: 227.2 bits;  conditional E-value: 6.3e-72
             Bud3_N  10 ksefdnsddktlkekslkewldifekaaiftglDellwgkfiviVyrekeseklsalildklGvslyenvdlsskSrfypaveNLspkykks 101
                        k        ++l++++ +ew++++ +aaif+g+Dellwg f+++Vyre+++++l++l++d++Gv+++++vd+s++SrfypaveNL+p+y+++
  SwissProt::Q9HF61  27 K--------DWLLRRQPTEWEALLGEAAIFSGQDELLWGPFVACVYREPRTTRLNCLFMDRIGVMHLHSVDVSDTSRFYPAVENLRPEYRTQ 110
                        3........6899******************************************************************************* PP

             Bud3_N 102 nvrkslAvalLkkyallnesklskikselsklpeyDethaGdlAsrcklvegkkpkelgkkllqlGllqersvkslllDVv 182
                         vr++lAv lLkky+ll++s+++ i++el+  ++yD+t+aGdlA++c+lveg++++++g+ l++lGl+q+r+v+sl+lDVv
  SwissProt::Q9HF61 111 VVRRCLAVGLLKKYVLLDPSAVRLIRAELP--YDYDQTTAGDLANTCELVEGQAARDVGQLLVRLGLVQPRHVRSLMLDVV 189
                        ******************************..8***********************************************8 PP



Or compare SwissProt::Q9HF61 to CDD or PaperBLAST