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Align CharProtDB::CH_088627 to PF12051 (DUF3533)

CharProtDB::CH_088627 has 901 amino acids

Query:       DUF3533  [M=376]
Accession:   PF12051.11
Description: Protein of unknown function (DUF3533)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence              Description
    ------- ------ -----    ------- ------ -----   ---- --  --------              -----------
    5.6e-11   28.0   1.0    5.6e-11   28.0   1.0    3.4  3  CharProtDB::CH_088627  


Domain annotation for each sequence (and alignments):
>> CharProtDB::CH_088627  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.0   1.0   5.6e-11   5.6e-11      17     190 ..      43     212 ..      25     221 .. 0.77
   2 ?   -0.5   1.7     0.027     0.027      99     171 ..     339     408 ..     288     432 .. 0.59
   3 !    4.3   1.0   0.00093   0.00093     163     349 ..     663     847 ..     606     873 .. 0.70

  Alignments for each domain:
  == domain 1  score: 28.0 bits;  conditional E-value: 5.6e-11
                DUF3533  17 wGalyrrsdrlknlnvlvVneDeg...gselepvvgeavakiiketassslgtwkvinssefkesekeveelvhkekywgalvvkena 101
                            + al+++  ++++l+++v  +D+    +++++++  e +++++k+ +      wk+++      s++e+ + v  +ky++ ++ ++++
  CharProtDB::CH_088627  43 IKALWDPYANTSQLPIAVYSADKPasfQDKTINIGDEVLKNLKKNHQ----LGWKFVD------SKAELDKGVKSGKYYAGIYLPKDF 120
                            45788888999*************77555555555555554444444....66****8......9*********************** PP

                DUF3533 102 tealyaalasangass..ynstellelvy..esgrdptnvksyilpiltqleaaalskyskellqslikslsnssqaallallaspla 185
                            +++l + ++ + ++++  y+ +e ++ +    +++ +++++s+i++ + ++++  l k  +++  ++ k++ ++++++++ +l+++ +
  CharProtDB::CH_088627 121 SKDLLSFTTGDIKKPQivYSINEKINAIApkITSKGASSLQSQISEEFINTASSTLLKTFNTIGYDIDKNMVSIQKVKSA-ILSTNDN 207
                            ********88877765225555777777544799***********99888888888889999999***********9996.8888777 PP

                DUF3533 186 fnsiD 190
                            + +iD
  CharProtDB::CH_088627 208 LGTID 212
                            76666 PP

  == domain 2  score: -0.5 bits;  conditional E-value: 0.027
                DUF3533  99 enatealyaalasangassynstellelvyesgrdptnvksyilpiltqleaaals.kyskellqslikslsns 171
                             +a +++++al s ++  s + t  l+++ e +++ ++v  +i +++ + + + ++ ++ ++l++++i+++  +
  CharProtDB::CH_088627 339 LDAAKKMQSALPSITN--SVQIT--LQSIQEFSKNTSSVLAVIDQAIADNQLTDEEkEQINSLITNFINNIARQ 408
                            4555555555522222..22222..4444444444444444444444333322222122233333333333333 PP

  == domain 3  score: 4.3 bits;  conditional E-value: 0.00093
                DUF3533 163 slikslsnssqaallallasplafnsiDlrpftdavalaplqvgliyliiltffqlaflgklhaqml...srklkfkqllvyrllisv 247
                            +++k l+  ++ ++ +  ++p++++ + + p+ ++   a++ ++ ++++ +  + l+ l  +   +    +++ + ++ ++ r+ + v
  CharProtDB::CH_088627 663 EIVKLLKLDATKES-DFWTQPVEVQENQVYPIANN-GSASTPFYTALCLWVGAVLLSSLATTEVHLSdkdKKRYSKREQFFARMGSFV 748
                            44444444444444.37888888888888888654.3334457777777777777666666666665557777777777888888888 PP

                DUF3533 248 islfvlSLffslvs.lafqvdftvafGragFvvyWmitwlvmlavglanenvasilgppylpvwllfwvilNvst..tfvPlelspgF 332
                               +  +L+++l +   ++vd++  f         ++  l+ +a+ +++ ++++++g    +++++++v   +s   + +P+++s +F
  CharProtDB::CH_088627 749 AIGLAQALIVTLGNyFGLGVDVRDPFYSV------LFALLISIAFMIMVYVLVALFGNVGKGIAIIILVL-SISGggGNYPIQVSGKF 829
                            88888888888888677888885555552......45556666777777788888899999999888775.4555469********** PP

                DUF3533 333 Yrygyal.Plhniveilr 349
                            ++      P+  +v++lr
  CharProtDB::CH_088627 830 FQAINPYlPFTHAVNLLR 847
                            *98877669888888877 PP



Or compare CharProtDB::CH_088627 to CDD or PaperBLAST