PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS2127107 to PF12051 (DUF3533)

VIMSS2127107 has 799 amino acids

Query:       DUF3533  [M=378]
Accession:   PF12051.8
Description: Protein of unknown function (DUF3533)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      1e-17   50.2   7.7    5.1e-15   41.3   0.1    3.7  4  VIMSS2127107  


Domain annotation for each sequence (and alignments):
>> VIMSS2127107  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3   0.1   5.1e-15   5.1e-15       5     170 ..      22     173 ..      15     205 .. 0.78
   2 ?   -1.6   3.0     0.053     0.053     154     179 ..     293     318 ..     252     398 .. 0.57
   3 ?   -2.6   0.2      0.11      0.11     134     206 ..     453     526 ..     444     529 .. 0.68
   4 !   20.1   3.1   1.4e-08   1.4e-08     157     352 ..     576     763 ..     531     790 .. 0.70

  Alignments for each domain:
  == domain 1  score: 41.3 bits;  conditional E-value: 5.1e-15
       DUF3533   5 lavlilailslywGalyrrsdrlknlnvlvVneDeg...gseltpvvgeavaqainettssslgtwtvvnpsefkeseeeveelvhkekywgaivvk 98 
                   la++   +  ++ G++ ++  +l++l+v+vVn D+    +++  ++     +++i+e+++s+  ++++v       s+++  e + k++y+++i+ +
  VIMSS2127107  22 LALVPAIYNYIFLGSMWDPYGKLNDLPVAVVNLDKTselNGKKFKLG----DDVITEMKKSKDLDYHFV-------SKDKASEGIKKGDYYMVITFP 107
                   444444444599************************54444444444....455666665555888888.......699****************** PP

       DUF3533  99 enateklyaalsangassynstelleliyesgRdattvssyilp.altqleaaalakygsqllqqliqslsnt 170
                   en++e+ ++++  n+++     ++++l y++ R  + +ss  ++ a++ql++++ +++++++++++ ++l + 
  VIMSS2127107 108 ENFSENATTLM--NKEP-----KTVQLDYQTTRGHNYISSKMSEsAMNQLKSEVSKNITQTYTKEIFAKLGDM 173
                   ***********..3332.....578999999999888888776515778889999999999999998887665 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.053
       DUF3533 154 kygsqllqqliqslsntaqaaqlsna 179
                   ++ s+ l+q++q+++ +++ +q+ +a
  VIMSS2127107 293 QQLSEGLSQMAQKTTLSETQQQNISA 318
                   22333333333333222222221111 PP

  == domain 3  score: -2.6 bits;  conditional E-value: 0.11
       DUF3533 134 ttvssyilpaltqleaaalakygsqllqqliqsls.ntaqaaqlsna.llaspiafnsidlrPftdgvalaplqv 206
                   ++++s+ilp +++l++ ++  + sql++   +  s  t+ a+ +++a + a+++a +s dl+  t + + +++q+
  VIMSS2127107 453 SSLNSQILPGMNKLDSGLTT-FNSQLTSGGQKLSSgFTQYADGVAKAnAGAQQLASKSKDLQSGTMQLVSGLTQL 526
                   57889999999999988874.777777633332220233333344445899999999999988888877777775 PP

  == domain 4  score: 20.1 bits;  conditional E-value: 1.4e-08
       DUF3533 157 sqllqqliqslsntaqaaqlsnallaspiafnsidlrPft.dgvalaplqvgliyliiltffqfaflgklhaemg.lsrkl.kfkqllvyrllisvv 250
                   s+ l+++  sls+t+ ++ +++  +a p++++  d+  ++ +g+++ p      y+i ++ f  a+ +++   +g + +k  + +++++ ++  +++
  VIMSS2127107 576 STALTKADDSLSATNSTDENAK-KVAAPLKLKHTDHDNVPvNGAGMTP------YMINVALFIGALATNVVIGVGfSGEKWkSGREFMFAKIGTNGL 665
                   3444455556666555555433.6889999999999888635677777......777778887666666666666545555478999999******* PP

       DUF3533 251 slfvlSlffslvslafqvdftvafGragFvvyWmitwlvmaavglanenvasilgppylpvwllfwvilNvss..tfvPlelspgFYrygyal.Plh 344
                   +++  ++++ ++ +++++      ++  +  + ++  l+ +a   +n  ++++   ++  +++++  +l +++  +++Pl+l+p+ Y+    + P+ 
  VIMSS2127107 666 VALLQGIIVWGAVALLGLSP----NH--WWEMLLVVLLISFAYMAINTFFLTA-LGKVGEFVMIVVLVLQLATsaGTYPLQLAPKIYQVISPWlPMT 755
                   ***************99999....44..3333333333333333333333344.445556777777777666655*********************9 PP

       DUF3533 345 niveilrv 352
                   +  ++lr 
  VIMSS2127107 756 YGLKMLRE 763
                   99998874 PP



Or compare VIMSS2127107 to CDD or PaperBLAST