PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS10349356 to PF12097 (DUF3573)

VIMSS10349356 has 492 amino acids

Query:       DUF3573  [M=383]
Accession:   PF12097.12
Description: Protein of unknown function (DUF3573)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
   3.5e-195  634.2  21.6   4.9e-195  633.7  21.6    1.1  1  VIMSS10349356  


Domain annotation for each sequence (and alignments):
>> VIMSS10349356  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  633.7  21.6  4.9e-195  4.9e-195       1     383 []      10     371 ..      10     373 .. 0.99

  Alignments for each domain:
  == domain 1  score: 633.7 bits;  conditional E-value: 4.9e-195
        DUF3573   1 flkkkllivisllvlsilaysedsasyaesneqisksnlidkelilklqkqikelqaeinhlketknsnesaqfttysskvedsklprslldnkes 96 
                    +++kklli+ s++++si+      +syae+n+qis         il+lqkqikelq+einh++etk+ ne+++fttyss+v+dsk   s+l+nke+
  VIMSS10349356  10 YIYKKLLIY-SFFMCSIC------HSYAELNNQIS---------ILELQKQIKELQTEINHFEETKI-NENFEFTTYSSEVVDSK---SKLRNKET 85 
                    79*******.********......***********.........***********************.*****************...******** PP

        DUF3573  97 kvlstvqklsvdiltnidaessiinladkplGgifnkdGgidvGgapaittqGqvtylGsysGnnsipiGmissnlfastvlgqrekfddysiflG 192
                    kvl+tvq+++vdi++ni++es+ii+l++kplG+ifn++G+idvG+apaitt+Gq++ylGsysGnnsipiGmi+++lfast+++q+ekfd+ysiflG
  VIMSS10349356  86 KVLYTVQNNNVDIIQNISPESTIIDLRGKPLGKIFNQNGSIDVGNAPAITTDGQAAYLGSYSGNNSIPIGMIPGKLFASTIILQKEKFDQYSIFLG 181
                    ************************************************************************************************ PP

        DUF3573 193 GlieadaqawfGssvikv....nkatslasnGqniyltaanlyflsnlGhyvtaefefdtselnnfslGnafvifGnldvspffvtaGrnklsvga 284
                    Gli++daq+wfG+s+++v    n++ts++s+Gqniy+++a+l+fl+n+G+y+ta+++++tselnnf++G+afvi+Gn+dvsp+f+t+G+++l++++
  VIMSS10349356 182 GLIRVDAQTWFGDSIPRVdfnnNPTTSFDSKGQNIYPSTARLFFLANMGNYITAAYNVSTSELNNFNIGDAFVIIGNMDVSPYFITVGKSTLTIAN 277
                    ********************9999************************************************************************ PP

        DUF3573 285 lGGGGpwtsGitnflspgkvtnvslnyksdvlnanvavfgsndrkanfstGlfyadkwtdnlavGfntGyvynlaGagnssiarilanlnrssdti 380
                    lGGGGp+tsGi+nfl++g++tn+slnyk+++ln++va+f++nd+kanfs+Glfyadkwtdnl+vGfntGyvy+laGa+nssi+ri++n     +ti
  VIMSS10349356 278 LGGGGPSTSGIANFLNTGRATNISLNYKTSTLNVSVAFFSTNDQKANFSAGLFYADKWTDNLSVGFNTGYVYDLAGAENSSIPRIALN-----KTI 368
                    ****************************************************************************************.....788 PP

        DUF3573 381 Gal 383
                    Ga+
  VIMSS10349356 369 GAF 371
                    876 PP



Or compare VIMSS10349356 to CDD or PaperBLAST