PaperBLAST – Find papers about a protein or its homologs

 

Align H0V032 to PF12130 (bMERB_dom)

H0V032 has 1068 amino acids

Query:       bMERB_dom  [M=134]
Accession:   PF12130.12
Description: Bivalent Mical/EHBP Rab binding domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    2.2e-39  120.8  22.0    4.8e-39  119.7  22.0    1.6  1  H0V032    


Domain annotation for each sequence (and alignments):
>> H0V032  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.7  22.0   4.8e-39   4.8e-39       1     127 [.     939    1066 ..     939    1068 .] 0.96

  Alignments for each domain:
  == domain 1  score: 119.7 bits;  conditional E-value: 4.8e-39
  bMERB_dom    1 iqreleeieeelkeleergvelEkkLR.eseegeeeeeelleewfeLvneknalvrreseLvilakeqeLeeeqaeleqelrellekedsekteedkk 97  
                 iqr+l+eie+ l+ele++gv+lE +LR +s + e++++ +le++++Lv++kn+lv +e+eL+i+ +e++Lee+q++l++elr +++ e++ kt+ed++
     H0V032  939 IQRRLNEIEAALRELEAEGVKLELALRsQSTSPEQQKKLWLEQLLQLVQKKNSLVAEEAELMITVQELDLEEKQWQLDHELRGYMNREETLKTAEDRQ 1036
                 8**************************7667778888889********************************************************** PP

  bMERB_dom   98 reeelleelveiVekRdelvesleedrlre 127 
                 +e+e+l++lve+V++Rd+l+++ ee rl e
     H0V032 1037 AEDEILRKLVEVVNQRDALIRFREECRLSE 1066
                 ***************************987 PP



Or compare H0V032 to CDD or PaperBLAST