NP_001247015.1 has 4743 amino acids
Query: bMERB_dom [M=134]
Accession: PF12130.12
Description: Bivalent Mical/EHBP Rab binding domain
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.8e-29 88.7 15.1 1.8e-29 88.7 15.1 4.3 4 NP_001247015.1
Domain annotation for each sequence (and alignments):
>> NP_001247015.1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -4.0 3.1 0.78 0.78 78 105 .. 19 46 .. 2 53 .. 0.69
2 ? -4.3 1.4 0.97 0.97 122 131 .. 816 825 .. 782 843 .. 0.57
3 ? -5.1 3.4 1 1 45 99 .. 1966 2020 .. 1944 2026 .. 0.46
4 ! 88.7 15.1 1.8e-29 1.8e-29 1 119 [. 4583 4708 .. 4583 4717 .. 0.96
Alignments for each domain:
== domain 1 score: -4.0 bits; conditional E-value: 0.78
bMERB_dom 78 qelrellekedsekteedkkreeellee 105
q+ ++ + +++++ t++++++++ l++e
NP_001247015.1 19 QQPQQQMPQQQQQLTAQQQQQQQLLMAE 46
4555666777778888888888888877 PP
== domain 2 score: -4.3 bits; conditional E-value: 0.97
bMERB_dom 122 edrlreeeed 131
++rl+e+ee+
NP_001247015.1 816 QQRLQEIEEN 825
2222222222 PP
== domain 3 score: -5.1 bits; conditional E-value: 1
bMERB_dom 45 eLvneknalvrreseLvilakeqeLeeeqaeleqelre....lleked..sekteedkkre 99
+L++ +++lv+ + ++ +Le+ + l++e r+ l+k+ ++e++++e
NP_001247015.1 1966 SLTRSRESLVSVSDSMS------DLEKTMDYLRNEWRNeatnFLQKKRdkFYAKKEEQEKE 2020
44444444444444444......44444444444444311113333221122233334444 PP
== domain 4 score: 88.7 bits; conditional E-value: 1.8e-29
bMERB_dom 1 iqreleeieeelkeleergvelEkkLR.......eseegeeeeeelleewfeLvneknalvrreseLvilakeqeLeeeqaeleqelrellek 86
iqre eeie++lk+le+rgv +Ek+LR + +++++++e+ll+e++e++++ +al +r++eL+i+++e++Le+++a+l++el+ +l++
NP_001247015.1 4583 IQREQEEIEVQLKDLEARGVLIEKALRgeaqnieNLDATKDNDEKLLKELLEIWRNITALKKRDEELTIRQQELQLEYRHAQLKEELNLRLSC 4675
8******************************99988999****************************************************** PP
bMERB_dom 87 edsekteedkkreeelleelveiVekRdelves 119
++ +k+++d ++e +l+e++eiV kR +l +
NP_001247015.1 4676 NKLDKSSADVAAEGAILNEMLEIVAKRAALRPT 4708
****************************99765 PP
Or compare NP_001247015.1 to CDD or PaperBLAST