NP_001299826.1 has 783 amino acids
Query: bMERB_dom [M=134]
Accession: PF12130.12
Description: Bivalent Mical/EHBP Rab binding domain
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.7e-48 150.3 22.9 1.7e-48 150.3 22.9 2.1 2 NP_001299826.1
Domain annotation for each sequence (and alignments):
>> NP_001299826.1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.1 0.6 0.1 0.1 86 109 .. 414 437 .. 403 443 .. 0.66
2 ! 150.3 22.9 1.7e-48 1.7e-48 1 134 [] 613 749 .. 613 749 .. 0.94
Alignments for each domain:
== domain 1 score: -1.1 bits; conditional E-value: 0.1
bMERB_dom 86 kedsekteedkkreeelleelvei 109
+e+++ +e++k++ + ++ ++v++
NP_001299826.1 414 TEKEKENEKEKEKAKAVIGKMVKV 437
333444455666667888888876 PP
== domain 2 score: 150.3 bits; conditional E-value: 1.7e-48
bMERB_dom 1 iqreleeieeelkeleergvelEkkLReseegeeeeee....lleewfeLvneknalvrreseLvilakeqeLeeeqaeleqelrellekedsek 91
iq+el+eie +++ele++gvelEk+LR+++e+ ee+ + l+ +wf+L+++k+ +rreseLv++a++q+Leeeq +++ elr+l+ek+d+ k
NP_001299826.1 613 IQKELKEIEMNMNELEKKGVELEKQLRQCDEDGEED-AlmndLMVDWFTLIRNKQVYMRRESELVYIARTQDLEEEQPSVDAELRRLMEKPDHLK 706
89*************************766644444.3466699*************************************************** PP
bMERB_dom 92 teedkkreeelleelveiVekRdelvesleedrlreeeedeel 134
t +d+kreeel+++lveiV++R+++ve l+edrlreeeede+l
NP_001299826.1 707 TLWDRKREEELMAKLVEIVNDRNAIVEGLDEDRLREEEEDEQL 749
****************************************985 PP
Or compare NP_001299826.1 to CDD or PaperBLAST