PaperBLAST – Find papers about a protein or its homologs

 

Align Q7RTP6 to PF12130 (bMERB_dom)

Q7RTP6 has 2002 amino acids

Query:       bMERB_dom  [M=134]
Accession:   PF12130.12
Description: Bivalent Mical/EHBP Rab binding domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    5.6e-48  148.6  29.0    5.6e-48  148.6  29.0    2.5  2  Q7RTP6    


Domain annotation for each sequence (and alignments):
>> Q7RTP6  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?  -10.6   9.1         1         1      77     111 ..    1002    1029 ..     991    1054 .. 0.42
   2 !  148.6  29.0   5.6e-48   5.6e-48       1     134 []    1854    1988 ..    1854    1988 .. 0.98

  Alignments for each domain:
  == domain 1  score: -10.6 bits;  conditional E-value: 1
  bMERB_dom   77 eqelrellekedsekteedkkreeelleelveiVe 111 
                 e+e +e  + e++e +e+ ++r ++       +++
     Q7RTP6 1002 EEEEEEDYDEEEEESSEAGNQRLQQ-------VMH 1029
                 3333333333333333333333333.......333 PP

  == domain 2  score: 148.6 bits;  conditional E-value: 5.6e-48
  bMERB_dom    1 iqreleeieeelkeleergvelEkkLR.eseegeeeeeelleewfeLvneknalvrreseLvilakeqeLeeeqaeleqelrellekedsekteedkk 97  
                 iqr+l+++ee+++ leergv +Ek+LR e   g++++ +l++ewf+Lv+ekna+vr+eseL+i+a+e+eLe++q++l+qelre++++ed+ ktee+ +
     Q7RTP6 1854 IQRQLQQVEERQRRLEERGVAVEKALRgEAGMGKKDDPKLMQEWFKLVQEKNAMVRYESELMIFARELELEDRQSRLQQELRERMAVEDHLKTEEELS 1951
                 8**************************988899***************************************************************** PP

  bMERB_dom   98 reeelleelveiVekRdelvesleedrlreeeedeel 134 
                 +e+++l+e++e+Ve+Rd+lv  lee+rlre+eed++l
     Q7RTP6 1952 EEKQILNEMLEVVEQRDSLVALLEEQRLREREEDKDL 1988
                 **********************************985 PP



Or compare Q7RTP6 to CDD or PaperBLAST