Q8NDI1 has 1231 amino acids
Query: bMERB_dom [M=134]
Accession: PF12130.12
Description: Bivalent Mical/EHBP Rab binding domain
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
9.2e-43 131.7 23.9 9.2e-43 131.7 23.9 4.1 4 Q8NDI1
Domain annotation for each sequence (and alignments):
>> Q8NDI1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? 0.7 2.0 0.029 0.029 87 124 .. 191 227 .. 167 236 .. 0.80
2 ? -1.6 0.3 0.14 0.14 69 87 .. 810 828 .. 803 846 .. 0.50
3 ? -2.3 0.8 0.24 0.24 82 106 .. 852 876 .. 850 885 .. 0.59
4 ! 131.7 23.9 9.2e-43 9.2e-43 3 134 .] 1076 1210 .. 1074 1210 .. 0.98
Alignments for each domain:
== domain 1 score: 0.7 bits; conditional E-value: 0.029
bMERB_dom 87 edsekteedkkreeelleelveiVekRdelvesleedr 124
ed+e +e++ ++ee +++ eiV++ ++l + l+ed+
Q8NDI1 191 EDNEDDDENRVNQEEKAAKITEIVNQLNALSS-LDEDQ 227
4677788888899999************9965.55554 PP
== domain 2 score: -1.6 bits; conditional E-value: 0.14
bMERB_dom 69 Leeeqaeleqelrelleke 87
L ++q+el++ r lle+
Q8NDI1 810 LLSRQEELKERARVLLEQA 828
4444444444444433332 PP
== domain 3 score: -2.3 bits; conditional E-value: 0.24
bMERB_dom 82 ellekedsekteedkkreeelleel 106
+l +++d+e+ + ++r ++l++e
Q8NDI1 852 QLSDQQDEERRRQLRERARQLIAEA 876
5555666666666666666666655 PP
== domain 4 score: 131.7 bits; conditional E-value: 9.2e-43
bMERB_dom 3 releeieeelkeleergvelEkkLR...eseegeeeeeelleewfeLvneknalvrreseLvilakeqeLeeeqaeleqelrellekedsekteedkk 97
el ++e+e+k+++ r++ +Ek+LR ++ +++eeee++++ewf Lvn+knal+rr ++L++l+ke++Le++++ l++elr +l++ed++kte++k+
Q8NDI1 1076 GELAALENEQKQIDTRAALVEKRLRylmDTGRNTEEEEAMMQEWFMLVNKKNALIRRMNQLSLLEKEHDLERRYELLNRELRAMLAIEDWQKTEAQKR 1173
599*************************88999***************************************************************** PP
bMERB_dom 98 reeelleelveiVekRdelvesleedrlreeeedeel 134
re+ ll+elv +V+kRd+lv++l+++++++eeede+l
Q8NDI1 1174 REQLLLDELVALVNKRDALVRDLDAQEKQAEEEDEHL 1210
**********************************985 PP
Or compare Q8NDI1 to CDD or PaperBLAST