PaperBLAST – Find papers about a protein or its homologs

 

Align NP_062802.2 to PF12463 (DUF3689)

NP_062802.2 has 789 amino acids

Query:       DUF3689  [M=315]
Accession:   PF12463.12
Description: Protein of unknown function (DUF3689)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   3.4e-136  439.7  14.0   5.7e-136  439.0  14.0    1.4  1  NP_062802.2  


Domain annotation for each sequence (and alignments):
>> NP_062802.2  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  439.0  14.0  5.7e-136  5.7e-136       1     314 [.     399     705 ..     399     706 .. 0.98

  Alignments for each domain:
  == domain 1  score: 439.0 bits;  conditional E-value: 5.7e-136
      DUF3689   1 vqkrlaklglvplLnklfekliWkpsvpdltadeelhgqncdcspdttlkiqfLRLvhsfadsstykylllseeElselkqisskknseelsevvrva 98 
                  v++++a+++l+p Ln+lf+kliW++++++  + +  h qncdcspd+tlkiqfLRL++sf+d++++kylll+++El+el++is k+n++e+++v +++
  NP_062802.2 399 VHRMIAEFKLIPGLNNLFDKLIWRKHSASALVLHG-HNQNCDCSPDITLKIQFLRLLQSFSDHHENKYLLLNNQELNELSAISLKANIPEVEAVLNTD 495
                  799**********************9966666665.66************************************************************ PP

      DUF3689  99 eslackekrgLlskilrklkkepidsifrFwlaravEsflRgatsyaeqlfllkrdllealvdvllsselksrevlqslFDlLgelikfnvdalkrfd 196
                  +sl+c++krgLl+++l+++kkep +s+frFw+aravEsflRg+tsya+q+fllkr+lle++++++++se+ksr+vlqs+FDlLgel+kfnvda+krf+
  NP_062802.2 496 RSLVCDGKRGLLTRLLQVMKKEPAESSFRFWQARAVESFLRGTTSYADQMFLLKRGLLEHILYCIVDSECKSRDVLQSYFDLLGELMKFNVDAFKRFN 593
                  ************************************************************************************************** PP

      DUF3689 197 kllntdekfakflevvelsLvDsNvflRsvlltldkfakrgssaeqddlevvevletsrlleyltelkrrltllarLvtiisvdtlsqEnvsCLNtal 294
                  k++ntd+kf++fl+++++sLvDsN+++R+v+l+ld+f++      q d++v+evl+++rll+y+ +   ++ +l+rL++ii+v+tl+qEnvsCLNt+l
  NP_062802.2 594 KYINTDAKFQVFLKQINSSLVDSNMLVRCVTLSLDRFEN------QVDMKVAEVLSECRLLAYISQVPTQMSFLFRLINIIHVQTLTQENVSCLNTSL 685
                  *************************************77......779************************************************** PP

      DUF3689 295 vilvlaaRkgrLasyleaLa 314
                  vil+la+Rk+rL+ yl+ L+
  NP_062802.2 686 VILMLARRKERLPLYLRLLQ 705
                  ****************9997 PP



Or compare NP_062802.2 to CDD or PaperBLAST