biolip::6s6bK has 1024 amino acids
Query: Cmr2_N [M=111]
Accession: PF12469.12
Description: CRISPR-associated protein Cmr2, N-terminal
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.8e-34 103.9 0.0 9.6e-34 102.1 0.0 2.0 2 biolip::6s6bK
Domain annotation for each sequence (and alignments):
>> biolip::6s6bK
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 102.1 0.0 9.6e-34 9.6e-34 1 111 [] 189 339 .. 189 339 .. 0.86
2 ? -2.7 0.0 0.35 0.35 7 18 .. 798 809 .. 793 810 .. 0.82
Alignments for each domain:
== domain 1 score: 102.1 bits; conditional E-value: 9.6e-34
Cmr2_N 1 lvvvsigpVqefIaaaRktrDlWagSwllSylawkaieelveeyGpdvliyPslrgnplvdawlee.............................. 66
l++++ +V +fI+++RktrDlW++S+l+S+l+w++i +++eeyGpdv+++Pslr+n++++ +l+e
biolip::6s6bK 189 LLGIDTIGVADFISKGRKTRDLWISSYLVSALLWYVITWFIEEYGPDVILFPSLRFNQFYAFYLLEklrkegvsedvideikelitkyifngddlf 284
68899************************************************************9888888888888887777777777777777 PP
Cmr2_N 67 klseelktallpnkfvlilpkek....eaeelaee......iekalkeawkeiae 111
++ + + ++++p +++lilp e ++++++ ++++++e w++++e
biolip::6s6bK 285 ENLKIPPYPIIPGRITLILPGLIregeEYKKVQDDncfiskVKERYNEGWRKLIE 339
6677****************776544322244444888889**********9975 PP
== domain 2 score: -2.7 bits; conditional E-value: 0.35
Cmr2_N 7 gpVqefIaaaRk 18
+V +fI+++R+
biolip::6s6bK 798 DEVLDFIKESRR 809
57889******8 PP
Or compare biolip::6s6bK to CDD or PaperBLAST