PaperBLAST – Find papers about a protein or its homologs

 

Align NP_705834.2 to PF12480 (GARIL_Rab2_bd)

NP_705834.2 has 594 amino acids

Query:       GARIL_Rab2_bd  [M=71]
Accession:   PF12480.12
Description: Golgi associated RAB2 interactor protein-like, Rab2B-binding domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.5e-29   88.3   0.1    2.9e-29   87.4   0.1    1.4  1  NP_705834.2  


Domain annotation for each sequence (and alignments):
>> NP_705834.2  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   87.4   0.1   2.9e-29   2.9e-29       1      69 [.     115     183 ..     115     184 .. 0.97

  Alignments for each domain:
  == domain 1  score: 87.4 bits;  conditional E-value: 2.9e-29
  GARIL_Rab2_bd   1 tleltrllPlkfvklsvydkekqllklklvtgRsfyleLtksadepeslfqmwlrlvhlLrsplsttek 69 
                    +leltrllPl fv++sv d+ekq+l+lk++tgRs+yl+L++  d++++lf++w++l++lLr+p++++++
    NP_705834.2 115 NLELTRLLPLRFVRISVQDHEKQQLRLKFATGRSCYLQLCPALDTRDDLFAYWEKLIYLLRPPMESNSS 183
                    59**************************************************************98875 PP



Or compare NP_705834.2 to CDD or PaperBLAST