NP_060264.4 has 1801 amino acids
Query: DUF3730 [M=227]
Accession: PF12530.12
Description: Focadhesin/RST1, DUF3730
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
5.6e-82 260.8 0.8 5.6e-82 260.8 0.8 3.1 3 NP_060264.4
Domain annotation for each sequence (and alignments):
>> NP_060264.4
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -1.7 0.2 0.094 0.094 127 187 .. 51 113 .. 45 118 .. 0.82
2 ? -3.3 0.4 0.29 0.29 33 63 .. 348 387 .. 315 391 .. 0.65
3 ! 260.8 0.8 5.6e-82 5.6e-82 1 227 [] 490 714 .. 490 714 .. 0.99
Alignments for each domain:
== domain 1 score: -1.7 bits; conditional E-value: 0.094
DUF3730 127 L.vecesespevqalglealeeLceaevvdlssawkviqkklsldk.rPevlksllsLlalla 187
L +c s++ +v++ +e+l +L ++ ++s +++ i + + + + ++k++++Ll + a
NP_060264.4 51 LwEKCCSDNVVVRTACCEGLVALVAQDHAEFSYVLNGILNLIPSTRnTHGLIKAIMHLLQMQA 113
446788888899999999999999999999999999999888888878889999999988765 PP
== domain 2 score: -3.3 bits; conditional E-value: 0.29
DUF3730 33 cvPlvlqfvqaLssrk.........asellqavalrLlak 63
lv++++q+Lss++ + + q++al Ll +
NP_060264.4 348 SLLLVMPILQILSSTAledcisvdeEGPSRQQLALNLLEM 387
4557889999999887777777766667777777777655 PP
== domain 3 score: 260.8 bits; conditional E-value: 5.6e-82
DUF3730 1 LllLlyklekesnpelvlkllkaLpsLashkvcvPlvlqfvqaLssrkasellqavalrLlaklwkkedrvypfLqkllaf.skssesafarslievl 97
+++L++kl+++ +p l++++l++Lp+L++hkvc+ ++l+++q L+++ ++l+av+lrLl++lw+k+drvyp+Lq+++a+ + +s s+ ++ ++e+l
NP_060264.4 490 IPVLMFKLGRPLEPILYNDILYTLPKLGVHKVCIGQILRIIQLLGTT---PRLRAVTLRLLTSLWEKQDRVYPELQRFMAVsDVPSLSVGKEVQWEKL 584
69*******************************************88...*******************************999************** PP
DUF3730 98 lslAasirdickerPdqhgedLvdalsavLvecesesp.evqalglealeeLceaevvdlssawkviqkklsldkrPevlksllsLlallaqlevehe 194
+++Aasirdick+rP+qhg+d+++a+s+vL+ec+++++ +++al l++l++Lc+aevv++ s+w+++++kls+d+rP++lk l++L++l+++l+v++
NP_060264.4 585 IAKAASIRDICKQRPYQHGADMLAAISQVLNECTKPDQaTPAALVLQGLHALCQAEVVCIRSTWNALSPKLSCDTRPLILKTLSELFSLVPSLTVNTT 682
************************************************************************************************** PP
DUF3730 195 qyeelklevllllWklessqddarvasaafeaL 227
+ye++k +vl++lW +++++d + va+aa+++L
NP_060264.4 683 EYENFKVQVLSFLWTHTQNKD-PIVANAAYRSL 714
*********************.********998 PP
Or compare NP_060264.4 to CDD or PaperBLAST