PaperBLAST – Find papers about a protein or its homologs

 

Align C6BHF3 to PF12883 (DUF3828)

C6BHF3 has 151 amino acids

Query:       DUF3828  [M=125]
Accession:   PF12883.11
Description: Protein of unknown function (DUF3828)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.4e-13   36.2   0.0    4.3e-13   35.8   0.0    1.1  1  C6BHF3    


Domain annotation for each sequence (and alignments):
>> C6BHF3  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.8   0.0   4.3e-13   4.3e-13       2     122 ..      32     146 ..      31     149 .. 0.86

  Alignments for each domain:
  == domain 1  score: 35.8 bits;  conditional E-value: 4.3e-13
  DUF3828   2 seqavrqfydsyvltftedertpkdkatgmreyiskelaarltsdliqnlyeqeildaDpfcyaqdy.epeviasvavgkadadlggekVdvtLgkqdgeki 102
              +e+a++ fy+ ++++ + d+  p +++   ++y++ ++  rl  ++ ++ +  +    D+f ++qdy + +++a ++v++a      ++V v  g q   ++
   C6BHF3  32 PEAAAISFYTWFIQHDS-DQTYPLSEPD-IERYVATDTVGRLR-NDYAHAG--PPNGVDYFLKVQDYdSRDWLAHIQVQRALMLGDVAVVPVSFGSQ--DPV 126
              688999********999.5888888777.99***********9.6666666..344789********888**********88777778999988765..599 PP

  DUF3828 103 qatvklkrEggkWkIddvrs 122
              +  v lkr +  WkI ++ +
   C6BHF3 127 HVLVFLKRVDATWKIIKIDD 146
              ***************99976 PP



Or compare C6BHF3 to CDD or PaperBLAST