NP_071353.4 has 1181 amino acids
Query: DUF4042 [M=182]
Accession: PF13251.10
Description: Domain of unknown function (DUF4042)
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.4e-71 224.8 5.2 3.4e-70 221.6 0.7 3.8 4 NP_071353.4
Domain annotation for each sequence (and alignments):
>> NP_071353.4
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -0.9 0.0 0.061 0.061 2 17 .. 181 196 .. 180 200 .. 0.87
2 ! 221.6 0.7 3.4e-70 3.4e-70 1 182 [] 418 599 .. 418 599 .. 0.99
3 ? -2.8 0.0 0.23 0.23 44 67 .. 860 883 .. 844 886 .. 0.80
4 ! 2.3 0.0 0.0066 0.0066 38 89 .. 954 1005 .. 938 1025 .. 0.81
Alignments for each domain:
== domain 1 score: -0.9 bits; conditional E-value: 0.061
DUF4042 2 vRiaalqllqalvkav 17
vR+aa++++ +l+ +v
NP_071353.4 181 VRRAAVHCMANLCLSV 196
9***********9776 PP
== domain 2 score: 221.6 bits; conditional E-value: 3.4e-70
DUF4042 1 kvRiaalqllqalvkavdkrslygyWhvllpdsvlkgrkseatLltvilkDpslkvRaaalqvlaalLdgsksfLaqaseskkpsgsftpfsvsLasi 98
kvR+ al+++ + +k+++k++lygyW++++pd+ g++++ +L+t+ lkDps+k Ra+alqvl+a+L+gsk+fL+ a+++ ++++ftpfsv +a +
NP_071353.4 418 KVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPQSVSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDTSDHRRAFTPFSVMIACS 515
8************************************************************************************************* PP
DUF4042 99 imelhraLllaleaetslpvltqllkcLavlvsatpyerLeagllsevvksvkklvkkkdsnvkvsallvlgalvstkkllpev 182
i+elhr+Lllal ae+s++++tq++kcLa lvs++py+rL+ ll++v++++k+++++kd+nv+vs+l++lga+vst+++lpev
NP_071353.4 516 IRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVSTHAPLPEV 599
**********************************************************************************97 PP
== domain 3 score: -2.8 bits; conditional E-value: 0.23
DUF4042 44 LltvilkDpslkvRaaalqvlaal 67
+++ l+D sl vRa a+ l +l
NP_071353.4 860 AILMSLEDKSLNVRAKAAWSLGNL 883
5678899*******9998776655 PP
== domain 4 score: 2.3 bits; conditional E-value: 0.0066
DUF4042 38 rkseatLltvilkDpslkvRaaalqvlaalLdgsksfLaqaseskkpsgsft 89
++s + L++++l+ +kvR a ++ ++++++ L +a + + +++ t
NP_071353.4 954 EESIQALISTVLTEAAMKVRWNACYAMGNVFKNPALPLGTAPWTSQAYNALT 1005
566788999999999999*999999999999999999998885554444443 PP
Or compare NP_071353.4 to CDD or PaperBLAST