PaperBLAST – Find papers about a protein or its homologs

 

Align XP_753411.1 to PF13430 (DUF4112)

XP_753411.1 has 257 amino acids

Query:       DUF4112  [M=105]
Accession:   PF13430.10
Description: Domain of unknown function (DUF4112)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.5e-41  125.4   0.9    7.1e-41  125.0   0.9    1.1  1  XP_753411.1  


Domain annotation for each sequence (and alignments):
>> XP_753411.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.0   0.9   7.1e-41   7.1e-41       2     105 .]      64     167 ..      63     167 .. 0.98

  Alignments for each domain:
  == domain 1  score: 125.0 bits;  conditional E-value: 7.1e-41
      DUF4112   2 lkkvrklayllDkafripgtgvrfGldpiigliPvvGdvisaalslylvreakkreg.lpkslllrmllniaiDfliglvPvvGdlfdalfkantrNa 98 
                  l++v+++ay+lD+++ ++++g+rfG+ ++i+liP++Gdv ++al++++v+++++++g lp +l + m++n++iDf+iglvP++Gd++da++k+ntrNa
  XP_753411.1  64 LTQVKRRAYRLDYCL-FNLCGIRFGWGSVIALIPFLGDVGDTALAMMVVKNCEEIDGgLPARLRMIMMINVLIDFVIGLVPFIGDVADAVYKCNTRNA 160
                  789**********99.7***************************************99**************************************** PP

      DUF4112  99 allekhl 105
                   +lekhl
  XP_753411.1 161 VILEKHL 167
                  ******8 PP



Or compare XP_753411.1 to CDD or PaperBLAST