PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS336801 to PF13503 (DUF4123)

VIMSS336801 has 283 amino acids

Query:       DUF4123  [M=123]
Accession:   PF13503.10
Description: Domain of unknown function (DUF4123)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    3.3e-37  113.7   1.0    8.4e-37  112.3   1.0    1.7  1  VIMSS336801  


Domain annotation for each sequence (and alignments):
>> VIMSS336801  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  112.3   1.0   8.4e-37   8.4e-37       1     121 [.       4     122 ..       4     124 .. 0.98

  Alignments for each domain:
  == domain 1  score: 112.3 bits;  conditional E-value: 8.4e-37
      DUF4123   1 lYaLlDgaadpellelleaesgeaase.LyagtpeeelaevgPwLveledaselsallrleeegwgpslglllaSaapleelarhLrsllqvrlpdge 97 
                  +Y+LlD+a  ++l ++l+++++ a+++ Ly +t++e+la++gP+Lve++++    +l+++++++w++++g++l+Saa+ +el++hLrsl++v+l++g 
  VIMSS336801   4 VYLLLDAALINDLAQRLLHMKEFARCQpLYVNTAYETLADCGPMLVEVTSN---IPLQEMFKQQWRDDSGIWLESAAKESELIEHLRSLVHVQLDSGV 98 
                  6**************************************************...99999*************************************** PP

      DUF4123  98 avllRfydprvlrallptldeeqr 121
                  +vl+R+ydpr+ r +l++l+++++
  VIMSS336801  99 TVLFRYYDPRITRLWLASLENHEL 122
                  ********************9987 PP



Or compare VIMSS336801 to CDD or PaperBLAST