PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS18172 to PF13698 (DUF4156)

VIMSS18172 has 117 amino acids

Query:       DUF4156  [M=90]
Accession:   PF13698.10
Description: Domain of unknown function (DUF4156)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence   Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    6.8e-38  115.3   0.1      8e-38  115.1   0.1    1.1  1  VIMSS18172  


Domain annotation for each sequence (and alignments):
>> VIMSS18172  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.1   0.1     8e-38     8e-38       1      90 []      23     115 ..      23     115 .. 0.95

  Alignments for each domain:
  == domain 1  score: 115.1 bits;  conditional E-value: 8e-38
     DUF4156   1 nelspegeaVklvdskpaseCqllGevtgsqgnwlsgilssnkelvrgalndLrneAaalGgntivlvtspasetls...etdvtmlgqvYkC 90 
                 nels++g++V++vd++p++eCql+G++tg+q+nwlsg++ ++  ++rga+ndLrn+Aaa+Ggn+i++ +sp+   ls   +td++++gqvYkC
  VIMSS18172  23 NELSAAGQSVRIVDEQPGAECQLIGTATGKQSNWLSGQHGEEGGSMRGAANDLRNQAAAMGGNVIYGISSPSQGMLSsfvPTDSQIIGQVYKC 115
                 689********************************************************************555544588************* PP



Or compare VIMSS18172 to CDD or PaperBLAST