PaperBLAST – Find papers about a protein or its homologs

 

Align XP_006528669.1 to PF13778 (DUF4174)

XP_006528669.1 has 445 amino acids

Query:       DUF4174  [M=120]
Accession:   PF13778.9
Description: Domain of unknown function (DUF4174)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    8.6e-41  125.4   0.2    1.2e-40  125.0   0.2    1.2  1  XP_006528669.1  


Domain annotation for each sequence (and alignments):
>> XP_006528669.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.0   0.2   1.2e-40   1.2e-40       2     120 .]     315     433 ..     314     433 .. 0.98

  Alignments for each domain:
  == domain 1  score: 125.0 bits;  conditional E-value: 1.2e-40
         DUF4174   2 LasfkwkrRlLiisapseedkllkkqrkeleaqecelaeRdllvlelvgseaketgkieeeqlsseliseLrkelkisekdfsmvLigkdggvke 96 
                     L++f++k+RlLi+sap+ ++ ++k+q+++l++++c+l+ R+++++elvg+ ++e+g+i+e+qls+  i+eLr+  ++++++f+mvLi+k+g ++e
  XP_006528669.1 315 LDQFYEKQRLLIVSAPDPSNRYYKMQISMLQQSTCGLDLRHVTIIELVGQPPQEVGRIREQQLSAGIIEELRQFQRLTRSYFNMVLIDKQGIDRE 409
                     99********************************************************************************************* PP

         DUF4174  97 ryeapvslealfdlIDampmRqqE 120
                     ry +pv++e++f++ID++ + ++E
  XP_006528669.1 410 RYMEPVTPEEIFTFIDDYLLSNEE 433
                     ****************99888776 PP



Or compare XP_006528669.1 to CDD or PaperBLAST