PaperBLAST – Find papers about a protein or its homologs

 

Align SwissProt::Q9NS93 to PF13886 (DUF4203)

SwissProt::Q9NS93 has 570 amino acids

Query:       DUF4203  [M=201]
Accession:   PF13886.10
Description: Domain of unknown function (DUF4203)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------          -----------
    1.5e-46  144.7  35.2    2.1e-46  144.3  35.2    1.2  1  SwissProt::Q9NS93  


Domain annotation for each sequence (and alignments):
>> SwissProt::Q9NS93  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  144.3  35.2   2.1e-46   2.1e-46       1     201 []     296     503 ..     296     503 .. 0.99

  Alignments for each domain:
  == domain 1  score: 144.3 bits;  conditional E-value: 2.1e-46
            DUF4203   1 vlgailillGlvycffGyrlfkltlflsgfllgslivlvlilkvmvlpsslvqgaflvaavvaGllgGlla.llfwelglfllgl.lgGlll 90 
                        v++++++llG+++cffG+r++k++lf++gf+++++++++li+++    + + ++++l++++v+G +gG+++ +++w++g+  +++ ++Gl+l
  SwissProt::Q9NS93 296 VFFTLFALLGFFICFFGHRFWKTELFFIGFIIMGFFFYILITRL----TPIKYDVNLILTAVTGSVGGMFLvAVWWRFGILSICMlCVGLVL 383
                        7899****************************************....999******************988******************** PP

            DUF4203  91 allllsllegglitslpakaif.......vlivvlalvgavlslslqkyllivstsvvGatavvlgiDyfvgaglkefllnlfpratv.... 171
                        ++l+ s+    ++t+l++  if       v+++++a++++v+++ + ++l+i++++v+G++ vvl+iD +  ++l++++ln+++ra +    
  SwissProt::Q9NS93 384 GFLISSVT---FFTPLGNLKIFhddgvfwVTFSCIAILIPVVFMGCLRILNILTCGVIGSYSVVLAIDSYWSTSLSYITLNVLKRALNkdfh 472
                        ********...****************************************************************************99*** PP

            DUF4203 172 .alltypltrgiwvllaaiivlallgvlvQl 201
                         a++++p++++++++la++ +la+ g+++Q+
  SwissProt::Q9NS93 473 rAFTNVPFQTNDFIILAVWGMLAVSGITLQI 503
                        ******************************6 PP



Or compare SwissProt::Q9NS93 to CDD or PaperBLAST