NP_001305259.1 has 272 amino acids
Query: MINDY-3_4_CD [M=344]
Accession: PF13898.10
Description: Deubiquitinating enzyme MINDY-3/4, conserved domain
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.1e-44 138.8 0.0 4.6e-41 126.9 0.0 2.0 2 NP_001305259.1
Domain annotation for each sequence (and alignments):
>> NP_001305259.1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 126.9 0.0 4.6e-41 4.6e-41 153 280 .. 5 128 .. 1 143 [. 0.91
2 ! 10.1 0.0 1.6e-05 1.6e-05 285 343 .. 205 264 .. 198 265 .. 0.83
Alignments for each domain:
== domain 1 score: 126.9 bits; conditional E-value: 4.6e-41
MINDY-3_4_CD 153 gsGvilllySailsrgiekvredldsptsallg.eegsctQelvnLlLtGrAssnvfngvveld.sedklatllkGilsrsdiGlLelfehlkll 245
+ Gv+l+lyS++l++gie++++++++ ++ l++ g+ +Q l+nLlLtG A+snv++g+ e+ + l Gi++++ +G+L+l+e+l+++
NP_001305259.1 5 KFGVLLFLYSVLLTKGIENIKNEIEDASEPLIDpVYGHGSQSLINLLLTGHAVSNVWDGDRECSgM------KLLGIHEQAAVGFLTLMEALRYC 93
559******************************988899999******************999733......599******************** PP
MINDY-3_4_CD 246 qvGsrLKtPklPiWvvcseshysVlFstnrellsd 280
+vGs+LK+Pk+PiW+v se h +V F+++ l+
NP_001305259.1 94 KVGSYLKSPKFPIWIVGSETHLTVFFAKDMALVAP 128
****************************9999864 PP
== domain 2 score: 10.1 bits; conditional E-value: 1.6e-05
MINDY-3_4_CD 285 rrfdLyYydglasqq.eeirltvdtrakkeeakekseeklipplellirTKWkeaavdwn 343
++f +y+y+gl++ + +e + v+ +a ++ ++ +p+ ++++TKW+ +++ w+
NP_001305259.1 205 ESFTVYHYNGLKQSNyNEKVMYVEGTAVVMGFEDPMLQTDDTPIKRCLQTKWPYIELLWT 264
6899*****987655156679999888878788888888889***********9999995 PP
Or compare NP_001305259.1 to CDD or PaperBLAST