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Align NP_115598.2 to PF13898 (MINDY-3_4_CD)

NP_115598.2 has 757 amino acids

Query:       MINDY-3_4_CD  [M=344]
Accession:   PF13898.10
Description: Deubiquitinating enzyme MINDY-3/4, conserved domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   8.5e-146  471.3   0.0   1.1e-145  471.0   0.0    1.1  1  NP_115598.2  


Domain annotation for each sequence (and alignments):
>> NP_115598.2  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  471.0   0.0  1.1e-145  1.1e-145       1     344 []     416     752 ..     416     752 .. 0.99

  Alignments for each domain:
  == domain 1  score: 471.0 bits;  conditional E-value: 1.1e-145
  MINDY-3_4_CD   1 rkllFgssaavfseeWkkqgftfretekelaYgLkqkkggprgvlavvQafvlkkLLfekkkkksasleellkpskeeqekaLvaalaeiLwragee 97 
                   ++llFgss+++f+eeWk q+f f++t  +l+Yg++q+kggp+gvla+vQ++vl+kLLfe   +++a++ + l+ps+++++++Lv+ala+i+wrag +
   NP_115598.2 416 KTLLFGSSFCCFNEEWKLQSFSFSNT-ASLKYGIVQNKGGPCGVLAAVQGCVLQKLLFEG--DSKADCAQGLQPSDAHRTRCLVLALADIVWRAGGR 509
                   799*********************99.********************************9..7888999**************************** PP

  MINDY-3_4_CD  98 kkavvalpteessflpasdykqdgltekltlfevtsledleeflkehieqFeeekgsGvilllySailsrgiekvredldsptsallgeegsctQel 194
                   ++avval +++++f+p+ +yk+dg++e+ltl+++t +edl +fl+++i+qFe +++ G+ill++Sailsr++e +r+d+d+pts+l+g++g+ctQel
   NP_115598.2 510 ERAVVALASRTQQFSPTGKYKADGVLETLTLHSLTCYEDLVTFLQQSIHQFEVGPY-GCILLTLSAILSRSTELIRQDFDVPTSHLIGAHGYCTQEL 605
                   *****************************************************998.**************************************** PP

  MINDY-3_4_CD 195 vnLlLtGrAssnvfngvveldsedklatllkGilsrsdiGlLelfehlkllqvGsrLKtPklPiWvvcseshysVlFstnrellsdwkaerrfdLyY 291
                   vnLlLtG+A+snvfn+vvelds+d+++tll+Gi +rsdiG+L+lfeh++++qvG+ LKtP++PiWvvcsesh+s+lFs++  ll+dw++er fdLyY
   NP_115598.2 606 VNLLLTGKAVSNVFNDVVELDSGDGNITLLRGIAARSDIGFLSLFEHYNMCQVGCFLKTPRFPIWVVCSESHFSILFSLQPGLLRDWRTERLFDLYY 702
                   ************************************************************************************************* PP

  MINDY-3_4_CD 292 ydglasqqeeirltvdtrakkeeakekseeklipplellirTKWkeaavdwng 344
                   ydgla+qqe+irlt+dt+++    +e+++++l+pplel+irTKWk+a+v+wng
   NP_115598.2 703 YDGLANQQEQIRLTIDTTQT---ISEDTDNDLVPPLELCIRTKWKGASVNWNG 752
                   ******************99...8899*************************7 PP



Or compare NP_115598.2 to CDD or PaperBLAST