NP_115598.2 has 757 amino acids
Query: MINDY-3_4_CD [M=344] Accession: PF13898.10 Description: Deubiquitinating enzyme MINDY-3/4, conserved domain Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 8.5e-146 471.3 0.0 1.1e-145 471.0 0.0 1.1 1 NP_115598.2 Domain annotation for each sequence (and alignments): >> NP_115598.2 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 471.0 0.0 1.1e-145 1.1e-145 1 344 [] 416 752 .. 416 752 .. 0.99 Alignments for each domain: == domain 1 score: 471.0 bits; conditional E-value: 1.1e-145 MINDY-3_4_CD 1 rkllFgssaavfseeWkkqgftfretekelaYgLkqkkggprgvlavvQafvlkkLLfekkkkksasleellkpskeeqekaLvaalaeiLwragee 97 ++llFgss+++f+eeWk q+f f++t +l+Yg++q+kggp+gvla+vQ++vl+kLLfe +++a++ + l+ps+++++++Lv+ala+i+wrag + NP_115598.2 416 KTLLFGSSFCCFNEEWKLQSFSFSNT-ASLKYGIVQNKGGPCGVLAAVQGCVLQKLLFEG--DSKADCAQGLQPSDAHRTRCLVLALADIVWRAGGR 509 799*********************99.********************************9..7888999**************************** PP MINDY-3_4_CD 98 kkavvalpteessflpasdykqdgltekltlfevtsledleeflkehieqFeeekgsGvilllySailsrgiekvredldsptsallgeegsctQel 194 ++avval +++++f+p+ +yk+dg++e+ltl+++t +edl +fl+++i+qFe +++ G+ill++Sailsr++e +r+d+d+pts+l+g++g+ctQel NP_115598.2 510 ERAVVALASRTQQFSPTGKYKADGVLETLTLHSLTCYEDLVTFLQQSIHQFEVGPY-GCILLTLSAILSRSTELIRQDFDVPTSHLIGAHGYCTQEL 605 *****************************************************998.**************************************** PP MINDY-3_4_CD 195 vnLlLtGrAssnvfngvveldsedklatllkGilsrsdiGlLelfehlkllqvGsrLKtPklPiWvvcseshysVlFstnrellsdwkaerrfdLyY 291 vnLlLtG+A+snvfn+vvelds+d+++tll+Gi +rsdiG+L+lfeh++++qvG+ LKtP++PiWvvcsesh+s+lFs++ ll+dw++er fdLyY NP_115598.2 606 VNLLLTGKAVSNVFNDVVELDSGDGNITLLRGIAARSDIGFLSLFEHYNMCQVGCFLKTPRFPIWVVCSESHFSILFSLQPGLLRDWRTERLFDLYY 702 ************************************************************************************************* PP MINDY-3_4_CD 292 ydglasqqeeirltvdtrakkeeakekseeklipplellirTKWkeaavdwng 344 ydgla+qqe+irlt+dt+++ +e+++++l+pplel+irTKWk+a+v+wng NP_115598.2 703 YDGLANQQEQIRLTIDTTQT---ISEDTDNDLVPPLELCIRTKWKGASVNWNG 752 ******************99...8899*************************7 PP
Or compare NP_115598.2 to CDD or PaperBLAST