VIMSS10082643 has 599 amino acids
Query: MINDY-3_4_CD [M=344]
Accession: PF13898.10
Description: Deubiquitinating enzyme MINDY-3/4, conserved domain
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.5e-68 216.6 0.0 4.7e-65 205.8 0.0 2.5 2 VIMSS10082643
Domain annotation for each sequence (and alignments):
>> VIMSS10082643
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 205.8 0.0 4.7e-65 4.7e-65 3 283 .. 116 415 .. 115 422 .. 0.85
2 ! 7.9 0.0 7.1e-05 7.1e-05 319 344 .] 568 593 .. 545 593 .. 0.74
Alignments for each domain:
== domain 1 score: 205.8 bits; conditional E-value: 4.7e-65
MINDY-3_4_CD 3 llFgssaavf.seeWkkqgftfretekelaYgLkqkkggprgvlavvQafvlkkLLfekkk..kksasleellkpske............eqekaL 83
++Fg+ ++ ++W++qg+ f+ e+ gL+q++ggp+gvla++Qafvlk+LL+ ++ + +l+++++ ++kaL
VIMSS10082643 116 IVFGNEVSKSvLAQWTNQGIRFSPD-PETTIGLVQHEGGPCGVLAALQAFVLKYLLYFPGDrvASPCMGVWTLSKDRHvvsdsfssvteeAKTKAL 210
8999988765599**********76.******************************9754323333333333333322555555555555****** PP
MINDY-3_4_CD 84 vaalaeiLwrageekkavv.........alpteessflpas.dykqdgltekltlfevtsledleeflkehieqFeeekgsGvilllySailsrgi 169
v ++ eiL+ +g++++av+ + +++++ + ++ +l l + ++t+ +++ l+ i+ F++ + G++l+l+Sa+lsrg+
VIMSS10082643 211 VRSMCEILFMCGDNNRAVIasftnfedsSSNQKDEAMAGGLpIESASDLQKILRFETFTTQASAQNKLEGTITAFQSRM--GALLFLISALLSRGL 304
*******************77777777655555555555554456677888889999*******************977..7************** PP
MINDY-3_4_CD 170 ekvredldsptsallg.eegsctQelvnLlLtGrAssnvfngvveldsedklatllkGilsrsdiGlLelfehlkllqvGsrLKtPklPiWvvcse 264
++v+ d d+p+ l++ g+ +Qe+vnLlL+G A++nvf+g ++l+ + + lkGi++ d+G+L+l e l+ ++vG++LK Pk PiWv+ se
VIMSS10082643 305 DSVQADRDDPNLPLVTaPFGHASQEIVNLLLCGEAVPNVFDGRMDLGGG----MFLKGISKNVDVGFLTLLESLNFCKVGQNLKCPKWPIWVIGSE 396
****************8899***************************99....89***************************************** PP
MINDY-3_4_CD 265 shysVlFstnrellsdwka 283
shy+VlF+++ ++ ++ +
VIMSS10082643 397 SHYTVLFALDPSVQEENEL 415
**********999887554 PP
== domain 2 score: 7.9 bits; conditional E-value: 7.1e-05
MINDY-3_4_CD 319 seeklipplellirTKWkeaavdwng 344
+ + pl +irT+W++aa +w+g
VIMSS10082643 568 PKPVQHAPLVDCIRTRWSRAACSWSG 593
33445567889*************86 PP
Or compare VIMSS10082643 to CDD or PaperBLAST