XP_001708750.1 has 587 amino acids
Query: MINDY-3_4_CD [M=344]
Accession: PF13898.10
Description: Deubiquitinating enzyme MINDY-3/4, conserved domain
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.3e-31 95.8 0.0 2.4e-24 71.9 0.0 2.2 2 XP_001708750.1
Domain annotation for each sequence (and alignments):
>> XP_001708750.1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 21.8 0.0 4.4e-09 4.4e-09 24 61 .. 199 235 .. 162 250 .. 0.75
2 ! 71.9 0.0 2.4e-24 2.4e-24 128 344 .] 343 582 .. 328 582 .. 0.79
Alignments for each domain:
== domain 1 score: 21.8 bits; conditional E-value: 4.4e-09
MINDY-3_4_CD 24 retekelaYgLkqkkggprgvlavvQafvlkkLLfekk 61
+ ++ +++++q++ggp+gv+av+Qa k+L+ +k
XP_001708750.1 199 SVL-HPKSWAIHQREGGPCGVIAVIQARAAKYLFHGAK 235
322.56789***********************988764 PP
== domain 2 score: 71.9 bits; conditional E-value: 2.4e-24
MINDY-3_4_CD 128 lfevtsledleeflkehieqFee...ekgsGvilllySailsrgiekvr.edldspts............allgeegsctQelvnLlLtGrAssn 206
+++++s +++ +l +qF ++s + l++S+il+r++ ++ +d+ds+++ +l+++ ++ + elvnL++ G+A+
XP_001708750.1 343 VITASSPAEIHGILSSLFYQFYAitaFPSSFIPALVVSVILTRTLREIAvTDFDSSNNgshgpstglssdSLFTNMNNASMELVNLFIHGKAVAG 437
55556666666666666666643111344456689***********99648*******9*****99999988999999999************** PP
MINDY-3_4_CD 207 vfngvveldsedklatllkGilsrsdiGlLelfehlkllqvGsrLKtPkl.PiWvvcseshysVlFstnrellsd.........wkaerrfdLyY 291
++gvv +d lkGi++ +d+GlL++ e +++l++G +LK l P v +e hy+ lF ++ + + +++++d++Y
XP_001708750.1 438 THDGVVTCDGF-----TLKGIDTPTDVGLLSIYEYYNYLTIGDNLKWGVLcPCFVLFNEAHYTSLFPIDKAAMDTistgladrmFGSRKEVDVIY 527
********965.....69****************************98644******************998877444444455566799***** PP
MINDY-3_4_CD 292 ydglasqqeeirltvdtrakkeeakeksee.klipplellirTKW..keaavdwng 344
d+l q+e++rlt t + + k++++ + + +++li T + + ++++wng
XP_001708750.1 528 SDSLDDQSEAVRLTL-TLEGPVTCKREEDGiRDKSFVNQLIYTLFgtSIVSISWNG 582
***************.4444455555444404555699999999943345678886 PP
Or compare XP_001708750.1 to CDD or PaperBLAST