XP_024328930.1 has 935 amino acids
Query: MINDY-3_4_CD [M=344]
Accession: PF13898.10
Description: Deubiquitinating enzyme MINDY-3/4, conserved domain
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.6e-60 190.9 2.5 2.8e-32 98.0 0.0 3.5 3 XP_024328930.1
Domain annotation for each sequence (and alignments):
>> XP_024328930.1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 28.9 0.1 2.9e-11 2.9e-11 13 61 .. 239 286 .. 222 304 .. 0.83
2 ! 98.0 0.0 2.8e-32 2.8e-32 76 215 .. 528 673 .. 509 686 .. 0.75
3 ! 62.0 0.1 2.6e-21 2.6e-21 209 276 .. 720 787 .. 713 798 .. 0.89
Alignments for each domain:
== domain 1 score: 28.9 bits; conditional E-value: 2.9e-11
MINDY-3_4_CD 13 seeWkkqgftfretekelaYgLkqkkggprgvlavvQafvlkkLLfekk 61
++W+++++ f ++ k++++gL+q gp+g+++++Q++++ LLf+ k
XP_024328930.1 239 IKKWCNHSISFYDN-KNINFGLRQFLSGPCGLISSIQGYIIIILLFNYK 286
468**********8.*******************************986 PP
== domain 2 score: 98.0 bits; conditional E-value: 2.8e-32
MINDY-3_4_CD 76 keeqekaLvaalaeiLwrageekkavv.alpte..essflpasdykqdgltekltlf.....evtsledleeflkehieqFeeekgsGvilllyS 162
k+ + aLv++la iL+++ +++ vv l e ++ + +++ ++l+ +l+ + e++ ++d+ +f eh F++ ++Gvi +lyS
XP_024328930.1 528 KDLKYYALVESLAYILYQCTDKSYYVVvFLLPEcyDYPYYMNKKNCDENLVRDLKRItiyykEFNAIKDVVKFYLEHFIIFSS--STGVISFLYS 620
5567789****************855514444301334445555555677776654411011455555555555555555555..669******* PP
MINDY-3_4_CD 163 ailsrgiekvredldsptsallgeegsctQelvnLlLtGrAssnvfngvveld 215
+il+rg+++v++d+d+ ++ l+g g+c+QelvnLlLtGrA+snvf+++ ++
XP_024328930.1 621 VILTRGLHNVKNDMDDINHPLIGIYGHCSQELVNLLLTGRACSNVFDNNNVIN 673
***********************************************998776 PP
== domain 3 score: 62.0 bits; conditional E-value: 2.6e-21
MINDY-3_4_CD 209 ngvveldsedklatllkGilsrsdiGlLelfehlkllqvGsrLKtPklPiWvvcseshysVlFstnre 276
n++ + ++++++ ++lkGi++r iGlL+ fe++k+++vG + K P +PiWv++s++hy+VlFs+n +
XP_024328930.1 720 NNNSSSNNNNNNNIILKGINKRPLIGLLTDFEAFKYCEVGNYYKYPIYPIWVISSSNHYTVLFSLNIN 787
5666667888999***************************************************9865 PP
Or compare XP_024328930.1 to CDD or PaperBLAST