PaperBLAST – Find papers about a protein or its homologs

 

Align reanno::Marino:GFF1282 to PF13937 (DUF4212)

reanno::Marino:GFF1282 has 88 amino acids

Query:       DUF4212  [M=79]
Accession:   PF13937.10
Description: Domain of unknown function (DUF4212)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence               Description
    ------- ------ -----    ------- ------ -----   ---- --  --------               -----------
    2.8e-38  116.5   2.5    3.1e-38  116.4   2.5    1.0  1  reanno::Marino:GFF1282  


Domain annotation for each sequence (and alignments):
>> reanno::Marino:GFF1282  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  116.4   2.5   3.1e-38   3.1e-38       2      79 .]      10      86 ..       9      86 .. 0.98

  Alignments for each domain:
  == domain 1  score: 116.4 bits;  conditional E-value: 3.1e-38
                 DUF4212  2 kaYwranlrlililLviWflvsfglgilfaeelntirtflgfplgFwfaaqgsilvfvvlifvYalrmnrlDrkygve 79
                            +aYw+anlrli++ L++W+lvs+g++il+++ l  i  ++g +lgFwfa+qgsil+f++lif Ya+rmn++D+k+gv+
  reanno::Marino:GFF1282 10 EAYWKANLRLIFGSLIVWALVSYGFAILLRPMLAGI-PIGGTDLGFWFAQQGSILTFIALIFHYAWRMNKIDEKFGVH 86
                            79**********************************.5**************************************97 PP



Or compare reanno::Marino:GFF1282 to CDD or PaperBLAST