PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS10109989 to PF13962 (PGG)

VIMSS10109989 has 598 amino acids

Query:       PGG  [M=116]
Accession:   PF13962.10
Description: Domain of unknown function
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.5e-33  101.3   6.8    1.5e-33  101.3   6.8    1.8  2  VIMSS10109989  


Domain annotation for each sequence (and alignments):
>> VIMSS10109989  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  101.3   6.8   1.5e-33   1.5e-33       2     115 ..     418     527 ..     417     528 .. 0.94
   2 ?   -3.5   0.2      0.49      0.49      94     106 ..     549     561 ..     538     570 .. 0.50

  Alignments for each domain:
  == domain 1  score: 101.3 bits;  conditional E-value: 1.5e-33
            PGG   2 eklkearntlllvAtLiatvtFaAgftlPGGywqddskssaGkpilakkkafkvFvvsnaiAlvaSlvavvlllisslvedeakslkkklrvllvl 97 
                    e l++arnt+++vA+Lia+v+F++g+++PGG++qd   +  Gk+++ +  afk+F v+n iAl++Sl++v ll+  s+++ ++k+lk+++++++++
  VIMSS10109989 418 ESLQNARNTITIVAVLIASVAFTCGINPPGGVHQDG--PFIGKATAGRTLAFKIFSVANNIALFTSLSIVTLLV--SIISYRTKALKMCVVIAHKM 509
                    6799****************************8886..77******8888************************..4568899************* PP

            PGG  98 lvlallsllvAFaaglyl 115
                    ++la++s+++A+aa++++
  VIMSS10109989 510 MWLAVASMATAYAASAWI 527
                    ***************987 PP

  == domain 2  score: -3.5 bits;  conditional E-value: 0.49
            PGG  94 llvllvlallsll 106
                    +l ++++ + +++
  VIMSS10109989 549 ALGSMFVYVSFMM 561
                    2223333333333 PP



Or compare VIMSS10109989 to CDD or PaperBLAST