PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS9929595 to PF13962 (PGG)

VIMSS9929595 has 1181 amino acids

Query:       PGG  [M=116]
Accession:   PF13962.10
Description: Domain of unknown function
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.1e-167  533.7   8.8    1.9e-37  113.9   0.0    7.2  7  VIMSS9929595  


Domain annotation for each sequence (and alignments):
>> VIMSS9929595  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.2   0.1   9.2e-35   9.2e-35       4     115 ..      72     181 ..      70     182 .. 0.90
   2 !   97.0   0.0   3.2e-32   3.2e-32       2     115 ..     243     354 ..     242     355 .. 0.92
   3 !  107.3   0.0   2.1e-35   2.1e-35       2     115 ..     645     756 ..     644     757 .. 0.91
   4 !  104.6   0.0   1.5e-34   1.5e-34       2     115 ..     820     932 ..     819     933 .. 0.92
   5 !    3.2   1.7    0.0042    0.0042      54      92 ..     937     973 ..     932     982 .. 0.71
   6 !  113.9   0.0   1.9e-37   1.9e-37       2     115 ..    1010    1122 ..    1009    1123 .. 0.91
   7 ?   -3.3   0.3      0.41      0.41      70      99 ..    1141    1170 ..    1132    1177 .. 0.53

  Alignments for each domain:
  == domain 1  score: 105.2 bits;  conditional E-value: 9.2e-35
           PGG   4 lkearntlllvAtLiatvtFaAgftlPGGywqddsk.ssaGkpila.kkk.afkvFvvsnaiAlvaSlvavvlllisslvedeakslkkklrvllvl 97 
                   l++ r++l+l+A L++ vt+++g+t+PGG+w+++++ ++aG+p l+ + + +++vF+++na+A++aSlv+++lll++++    +k++ + lr ++++
  VIMSS9929595  72 LWKLRKYLVLLASLAVGVTYNSGLTPPGGFWNKTKDgHEAGDPALRvEFYeRYEVFFYCNATAFAASLVLIILLLSKRV----TKQELW-LRSMQFT 163
                   6789*****************************995599*******98889************************3344....344434.99***** PP

           PGG  98 lvlallsllvAFaaglyl 115
                   ++++l+sl++A++ag+++
  VIMSS9929595 164 MLVDLFSLMAAYVAGSCR 181
                   ****************98 PP

  == domain 2  score: 97.0 bits;  conditional E-value: 3.2e-32
           PGG   2 eklkearntlllvAtLiatvtFaAgftlPGGywqdds.kssaGkpila.kkk.afkvFvvsnaiAlvaSlvavvlllis.slvedeakslkkklrvl 94 
                   ++l+ear+++l++ t++at t++Ag+++PGG+w++++ k++  +p+l+ ++  ++++F+ +n++++vaSlv+++lll s +l    +++  +  +++
  VIMSS9929595 243 KDLEEARKFILMLVTFAATATYQAGLSPPGGFWAENDyKQRPATPVLRrHYLpRYNIFISCNSTSFVASLVTIILLL-SpEL----SRHGIR-SKAV 333
                   789*********************************97689*******77779************************.4355....677766.99** PP

           PGG  95 lvllvlallsllvAFaaglyl 115
                    v+++++l++l++A+aag+++
  VIMSS9929595 334 IVCVLADLFFLIGAYAAGCCR 354
                   *******************98 PP

  == domain 3  score: 107.3 bits;  conditional E-value: 2.1e-35
           PGG   2 eklkearntlllvAtLiatvtFaAgftlPGGywqdds.kssaGkpila.kkk.afkvFvvsnaiAlvaSlvavvlllisslvedeakslkkklrvll 95 
                   ++l+++r++lll+A+L++++t+++g+++PGG+w++++ ++saG+ +l+ +++ +f +F+++na+A+vaS+v++v+ll +   ++  +++ +k rvl+
  VIMSS9929595 645 DHLEKTRTYLLLLAILAVSLTYQSGLNPPGGFWSRSEnNHSAGDRVLEdNDHpRFIAFFYLNAVAFVASIVIIVVLL-E---KT-MSRKVTKHRVLQ 736
                   5799*******************************995589*******98888************************.3...22.34455679**** PP

           PGG  96 vllvlallsllvAFaaglyl 115
                   ++++++llsl++AF++g+++
  VIMSS9929595 737 LAMIVDLLSLTGAFVMGSCR 756
                   ******************97 PP

  == domain 4  score: 104.6 bits;  conditional E-value: 1.5e-34
           PGG   2 eklkearntlllvAtLiatvtFaAgftlPGGywqdds..kssaGkpila.kkk.afkvFvvsnaiAlvaSlvavvlllisslvedeakslkkklrvl 94 
                   ++l+++rn+ll +++++atvt++Ag+++PG++w+dd+  + + G+pil+ +++ +++vF++sn+i++v+S+++++ll+ +   ++++++  k  ++l
  VIMSS9929595 820 KELERRRNLLLTLSIIAATVTYQAGINPPGSVWSDDKdvSGRPGNPILQdNHPrRYDVFYYSNSISFVSSVAITILLV-N---KESCEHGIK-SYAL 911
                   6899********************************976578*******99999************************.3...444677755.99** PP

           PGG  95 lvllvlallsllvAFaaglyl 115
                    v+lv+ l++llvA++ag+++
  VIMSS9929595 912 RVCLVVGLVGLLVAYVAGSCR 932
                   *******************97 PP

  == domain 5  score: 3.2 bits;  conditional E-value: 0.0042
           PGG  54 kvFvvsnaiAlvaSlvavvlllisslvedeakslkkklr 92 
                    +Fv+  a+A+++Slv+ vll   s++e+ ++ l+k + 
  VIMSS9929595 937 SIFVIIIAVAVLVSLVIQVLLS--SMYETLRTPLAKLMD 973
                   69**************999998..333444455555444 PP

  == domain 6  score: 113.9 bits;  conditional E-value: 1.9e-37
           PGG    2 eklkearntlllvAtLiatvtFaAgftlPGGywqdds..kssaGkpila.kkk.afkvFvvsnaiAlvaSlvavvlllisslvedeakslkkklr 92  
                    ++ ++++++l+l+AtL+a+vt++Ag+++PGG+++dd+  ++ aG+p+l+  ++ ++k+F+++nai+++aS+v+++lll s++     ++++ +l 
  VIMSS9929595 1010 KRERKRHKYLMLIATLAASVTYQAGLNPPGGFRSDDDdnGHFAGDPLLRdINHrRYKTFFCFNAISFMASIVVIMLLL-SKS----IRKKPVRLE 1099
                    677899**************************9999974477*******95555************************.433....5788889** PP

           PGG   93 vllvllvlallsllvAFaaglyl 115 
                    vll++++l+lls+++AFaag+++
  VIMSS9929595 1100 VLLLIMILDLLSVMTAFAAGSCR 1122
                    *********************98 PP

  == domain 7  score: -3.3 bits;  conditional E-value: 0.41
           PGG   70 avvlllisslvedeakslkkklrvllvllv 99  
                    +v++++is+ + + +k++k+ + + + ++v
  VIMSS9929595 1141 LVFFVVISRAIGKCHKKWKTVVLFCSRCTV 1170
                    233333343356666777666665555554 PP



Or compare VIMSS9929595 to CDD or PaperBLAST