PaperBLAST – Find papers about a protein or its homologs

 

Align XP_009653409.1 to PF14273 (DUF4360)

XP_009653409.1 has 210 amino acids

Query:       DUF4360  [M=178]
Accession:   PF14273.10
Description: Domain of unknown function (DUF4360)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.1e-63  199.5   1.7    2.4e-63  199.3   1.7    1.0  1  XP_009653409.1  


Domain annotation for each sequence (and alignments):
>> XP_009653409.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  199.3   1.7   2.4e-63   2.4e-63       2     178 .]      23     210 .]      22     210 .] 0.95

  Alignments for each domain:
  == domain 1  score: 199.3 bits;  conditional E-value: 2.4e-63
         DUF4360   2 kitiksvsvsGsGCpqgtasvqvspdnt.....aftvtfddftaqigpgasptdsrknCqlnlnvkvpqGfqfavasadyrGyasldagvtatlk 91 
                     kiti+++s+sG+GCpqgt++++vs d+t     ++t++fd+f+++igpg+s t+++knCql+ln+++p+Gf+fav++  y+G+a ld+gvt+++ 
  XP_009653409.1  23 KITISKASHSGNGCPQGTVTSVVSGDKTaspryVITFGFDQFQTYIGPGTSYTERSKNCQLHLNLQYPAGFSFAVVDSVYHGFALLDPGVTGNFF 117
                     79**************************888889************************************************************* PP

         DUF4360  92 atyyfsgdseqt.ststtlsGp...ls.gdytltdevevastvwspCGes.ailnintelrvtsssskasglitvdstdgavtqtyhlawrkC 178
                     +tyyfs d+++t +t+t+++G    ++ + yt++d v++++ v spCG s a+ln+n++++++s++ +a g+it+d+++++++q++h++w kC
  XP_009653409.1 118 STYYFSADAAKTsTTQTSIRGGgpwAAgQVYTKQDIVPAGDVVRSPCGGSqATLNVNNRIALNSEKPEAFGMITNDDATVSLQQQVHIEWYKC 210
                     ******888887799*****874453335******************7766****************************************** PP



Or compare XP_009653409.1 to CDD or PaperBLAST