PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS10078937 to PF14309 (DUF4378)

VIMSS10078937 has 552 amino acids

Query:       DUF4378  [M=166]
Accession:   PF14309.10
Description: Domain of unknown function (DUF4378)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.4e-32   99.5   2.3    3.3e-32   98.3   2.3    1.7  1  VIMSS10078937  


Domain annotation for each sequence (and alignments):
>> VIMSS10078937  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   98.3   2.3   3.3e-32   3.3e-32       3     166 .]     404     547 ..     402     547 .. 0.89

  Alignments for each domain:
  == domain 1  score: 98.3 bits;  conditional E-value: 3.3e-32
        DUF4378   3 eYvrdiLeasglllkdsdellsrwhssespldpslfeeleekkgsaseeetresrserklLFDlvneiLveilelfkrsfsyppskvssassrrrp 98 
                     Yv+++L+ sg+l ++  +  ++w+s+e+pl+psl+ el+ +         +e   ++ lLFDlvne++ve     ++s  y+p           +
  VIMSS10078937 404 CYVKKVLKVSGFLENK--DNEEKWYSEEQPLNPSLLYELDIQE--------EETVNDKELLFDLVNEAIVET---QNHSQIYFP-----------K 475
                    6***********9665..45689****************9766........3677899**************...345566776...........3 PP

        DUF4378  99 kklsgeelleevwseirswlspe....selvldelvdkdlssregkwldledeveeigleierlIledLveE 166
                    + + g++ l+evw ++++ ls      ++++ld++v +dl +++++w++l+ e+e + le+e+lI++d ++E
  VIMSS10078937 476 TFPYGKRYLDEVWGRVEWSLSGLgaenRDRSLDDIVGRDLLTKSDGWMNLQGESEWLTLELEDLIFDDVLDE 547
                    4588**************88887999********************************************99 PP



Or compare VIMSS10078937 to CDD or PaperBLAST