PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS10084659 to PF14309 (DUF4378)

VIMSS10084659 has 689 amino acids

Query:       DUF4378  [M=164]
Accession:   PF14309.9
Description: Domain of unknown function (DUF4378)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    9.3e-14   38.3   2.1    9.3e-14   38.3   2.1    2.6  2  VIMSS10084659  


Domain annotation for each sequence (and alignments):
>> VIMSS10084659  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -2.4   1.6      0.31      0.31      96     126 ..     110     143 ..      75     171 .. 0.41
   2 !   38.3   2.1   9.3e-14   9.3e-14       2     164 .]     527     672 ..     526     672 .. 0.81

  Alignments for each domain:
  == domain 1  score: -2.4 bits;  conditional E-value: 0.31
        DUF4378  96 rkkklsg...eqlleevwseieswlsseelvvde 126
                       k ++   ++lle   ++i++++++++ v d+
  VIMSS10084659 110 ELEKYESkpvQGLLEREIRRIKNLKDETCDVPDK 143
                    2222333001333333334444444444444444 PP

  == domain 2  score: 38.3 bits;  conditional E-value: 9.3e-14
        DUF4378   2 feYvreiLlasglllkdsdellsrwhssespidpslfeelEekkgsssekerresrserklLFDlvneiLveilal.skrssaeppskvssakkr. 95 
                    +e+v+++L+as l    + +l++r++++      sl++e  +            ++ +  l+ D+ +eiL ei+++  k    +p s ++s++   
  VIMSS10084659 527 HEFVKKVLEASRLN---WTNLMARCNED-----TSLLDEFSHGS----------HNDQLLLVLDYTDEILREIYRQdIK---FWPFSPSKSSRVLn 601
                    89***********5...66677766665.....59999998655..........4567899************987443...34444445555556 PP

        DUF4378  96 rkkklsgeqlleevwseies.wlsse...elvvdelvdkdlssrsgkwldledeveeigleierlilkdLveE 164
                     +++l++++l++e  ++ ++ +l+      +++d++++ dl +    wld++ e e+++ +i ++i ++Lv E
  VIMSS10084659 602 LESSLREDDLIHETMRHFDWsLLC-SdspTRSLDQIIETDLIKP-CLWLDFGGESEGVVSDIVEKIQQQLVLE 672
                    7899***************83333.2478*************99.9************************976 PP



Or compare VIMSS10084659 to CDD or PaperBLAST