PaperBLAST – Find papers about a protein or its homologs

 

Align XP_037486750.1 to PF14309 (DUF4378)

XP_037486750.1 has 854 amino acids

Query:       DUF4378  [M=164]
Accession:   PF14309.9
Description: Domain of unknown function (DUF4378)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.2e-24   71.6   0.4    5.2e-24   71.6   0.4    2.5  2  XP_037486750.1  


Domain annotation for each sequence (and alignments):
>> XP_037486750.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.8      0.11      0.11      92     150 ..     516     577 ..     494     584 .. 0.56
   2 !   71.6   0.4   5.2e-24   5.2e-24       3     164 .]     702     847 ..     700     847 .. 0.90

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.11
         DUF4378  92 akkr.rkkklsgeqlleevwseieswlsseelvvdelvdkdlssr..sgkwldledeveeig 150
                      +++ +++++s+++ l+e+ +   ++l +e+ +  el+d+d+++     + l+l+ eve   
  XP_037486750.1 516 QETEsTNASSSASKELDELRTDHGNHLLEEHTISQELIDEDVKNMqdAAESLQLSTEVETSS 577
                     44443444455555555555555555555555555688998886544455556666666555 PP

  == domain 2  score: 71.6 bits;  conditional E-value: 5.2e-24
         DUF4378   3 eYvreiLlasglllkdsdellsrwhssespidpslfeelEekkgsssekerresrserklLFDlvneiLveilalskrssaeppskvssakkrrk 97 
                     ++++ +L+as+ + +    + +rw+++ s++  s++ e+  ++           + +  lLFD+v e+L+ i +     +   +++v+  k++ +
  XP_037486750.1 702 SFIKSVLEASESMAEG---CSERWYMDVSVLETSVLAEIGMSY---------CLTDDVVLLFDCVEEVLLRISN----NFFGADPWVAFLKNNVR 780
                     8**********98554...699*****************9999.........5677999*************44....45666778889999955 PP

         DUF4378  98 kklsgeqlleevwseieswlsse..elvvdelvdkdlssrsgkwldledeveeigleierlilkdLveE 164
                     +++ g +l++ev + i+++ +++   +++de+v kdl+s+   w+dl+ ++e++++++ +  l+dL+eE
  XP_037486750.1 781 PAPLGMELVKEVAKCIDCLVDDTgtPKALDEVVMKDLESG--PWMDLRCDAEDAVIDVWDGMLDDLLEE 847
                     56****************8888899*************88..**************************9 PP



Or compare XP_037486750.1 to CDD or PaperBLAST