PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS10089566 to PF14364 (DUF4408)

VIMSS10089566 has 309 amino acids

Query:       DUF4408  [M=33]
Accession:   PF14364.10
Description: Domain of unknown function (DUF4408)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.3e-16   46.5   5.0    2.2e-16   45.7   5.0    1.4  1  VIMSS10089566  


Domain annotation for each sequence (and alignments):
>> VIMSS10089566  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   45.7   5.0   2.2e-16   2.2e-16       2      33 .]      40      71 ..      40      71 .. 0.95

  Alignments for each domain:
  == domain 1  score: 45.7 bits;  conditional E-value: 2.2e-16
        DUF4408  2 slwsslrswltPpyLFvvlNvIIitIaasSrl 33
                   s+++ ++sw+tP++LFv+lN++I+tIa+sS++
  VIMSS10089566 40 SVLTAMYSWFTPTVLFVFLNLMIGTIAISSSF 71
                   68899*************************98 PP



Or compare VIMSS10089566 to CDD or PaperBLAST