PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS1256222 to PF14393 (DUF4422)

VIMSS1256222 has 270 amino acids

Query:       DUF4422  [M=220]
Accession:   PF14393.10
Description: Domain of unknown function (DUF4422)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.6e-94  301.2   7.8    3.4e-94  300.9   7.8    1.0  1  VIMSS1256222  


Domain annotation for each sequence (and alignments):
>> VIMSS1256222  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  300.9   7.8   3.4e-94   3.4e-94       2     219 ..       7     225 ..       6     226 .. 0.98

  Alignments for each domain:
  == domain 1  score: 300.9 bits;  conditional E-value: 3.4e-94
       DUF4422   2 ilvathkkyelpedelylpiqvGaalkkkedlgylkDdtGdnISekNpsYcELTalYwawknlkdadyvGlvHYRRyfskkkkk..ekklkkilsee 96 
                   +++athkky++p+d+lylpi+vGa+l+k++dlgy+kD+ GdnIS+kN+ Y+ELTalYwawk++ da+y+Gl+HYRR+f  k+ +  +++l+  ++++
  VIMSS1256222   7 VVIATHKKYKMPTDDLYLPIHVGAELNKDKDLGYQKDNVGDNISDKNDRYSELTALYWAWKHV-DAEYIGLAHYRRHFGGKNYHhgKDRLNWLVTKA 102
                   79************************************************************9.**************99887766899999***** PP

       DUF4422  97 eieellkkydiilpkkrklkieslyeqyaeahkkedldllrevikekypeyleafdkvmkkksahlfNmfimkkelfdeYcewLFdilfelekridi 193
                   e+e +l++yd+ilp+kr+++ie+ly++y+++h++++ld+++++ikekypey+++++kv++k+s ++fNm+im+k+l+d+Yc+wLFdilfelekr+ +
  VIMSS1256222 103 ELEPMLNNYDVILPRKRRYYIETLYSHYKHTHYSNQLDVTSDIIKEKYPEYADTYEKVINKTSGYMFNMVIMRKDLLDAYCTWLFDILFELEKRLGT 199
                   ************************************************************************************************* PP

       DUF4422 194 skydayqkRvfGflsErLlnvwlekn 219
                   ++ da+q+R++G++sE+++nvwlek+
  VIMSS1256222 200 QNLDAFQQRFYGRVSEIIFNVWLEKQ 225
                   ***********************985 PP



Or compare VIMSS1256222 to CDD or PaperBLAST