PaperBLAST – Find papers about a protein or its homologs

 

Align XP_006244255.1 to PF14688 (DUF4461)

XP_006244255.1 has 507 amino acids

Query:       DUF4461  [M=308]
Accession:   PF14688.10
Description: Domain of unknown function (DUF4461)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.2e-131  425.2   2.3   1.6e-131  424.7   2.3    1.2  1  XP_006244255.1  


Domain annotation for each sequence (and alignments):
>> XP_006244255.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  424.7   2.3  1.6e-131  1.6e-131       1     308 []     199     501 ..     199     501 .. 0.99

  Alignments for each domain:
  == domain 1  score: 424.7 bits;  conditional E-value: 1.6e-131
         DUF4461   1 ttlsswLkenekearkklkeslplreeikrlkeeLveelgLkdirwqcgwnvshrcsqLqsLsrlaqqnpeelknlkgrtvvfadrsGvsleGhv 95 
                     ttl+swL +n k a kklk+slplr+e++rlk+eL+e l+L+dirwq+gw+v+hrcsqL+sLsrlaqqn e+l+n+kg+t+vf+drsG+s+ Ghv
  XP_006244255.1 199 TTLTSWLGSNGKGAVKKLKNSLPLRKELDRLKNELSELLQLSDIRWQRGWGVAHRCSQLHSLSRLAQQNLEPLQNAKGCTIVFTDRSGMSALGHV 293
                     58********************************************************************************************* PP

         DUF4461  96 mLgtgdvhhqWtkllerlpsyekllkklpllekrlsqlLggiqvvrreel.pkltaeeyasqLsrlikalsdsrkkrkhpkslpeslsglqlvle 189
                     mLgt+dvhh+Wt+l+e+lp+y +l++++++le+++s+lLggiqvv++eel p+lt+ ey+s L++++++l++sr++   p+s    lsglq++l+
  XP_006244255.1 294 MLGTMDVHHHWTRLFESLPNYFDLQRRMSALEDQISHLLGGIQVVYIEELqPALTLDEYYSLLDTFYNQLQRSRAP-PRPQS----LSGLQMILS 383
                     ****************************************************************************.99999....********* PP

         DUF4461 190 sesgelslsetGqfiiPsscdaselvdfleenaeeArerlqryerlkaeeeqliercvkelsLksLtkddsvtpdqmiqccerLlkqsaapslqg 284
                     s+++++sl+e G+f+iP+ +d+++l++f++++a++Are+++r+e+lk++e++li+++++++sL++L+k++s++++qm++cc+rLl+qs  p+l+g
  XP_006244255.1 384 SDRYAPSLHELGHFNIPALSDPASLQSFMRTKAQQARENMRRREKLKVIENELIQASTRKFSLEKLYKEPSISSRQMVDCCKRLLEQSL-PYLHG 477
                     ****************************************************************************************7.***** PP

         DUF4461 285 lslcishyysvlqDGelcIPwdwk 308
                     ++lc+sh+ysv+qDG+lcIPw+wk
  XP_006244255.1 478 MHLCVSHFYSVMQDGDLCIPWNWK 501
                     ***********************7 PP



Or compare XP_006244255.1 to CDD or PaperBLAST