PaperBLAST – Find papers about a protein or its homologs

 

Align NP_650260.1 to PF14713 (DUF4464)

NP_650260.1 has 233 amino acids

Query:       DUF4464  [M=230]
Accession:   PF14713.10
Description: Domain of unknown function (DUF4464)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.8e-84  266.8   2.8    8.7e-84  266.7   2.8    1.0  1  NP_650260.1  


Domain annotation for each sequence (and alignments):
>> NP_650260.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  266.7   2.8   8.7e-84   8.7e-84       2     230 .]       5     232 ..       4     232 .. 0.97

  Alignments for each domain:
  == domain 1  score: 266.7 bits;  conditional E-value: 8.7e-84
      DUF4464   2 sllefetYedYLdsfitkedlrYLedeelarqlvelgyrgtgevlsreeFearkkaleealkpkkkkqkklfsaglelskdpllkaLaeREeanrskk 99 
                  s+ +f++Y++YL+sf+t ed rYL+ ++++ +l++lgyr+++++++++eF + kk++e+ l+p+  + + ++s+++ + +dp+l aLaeRE+ n++++
  NP_650260.1   5 SIAKFNNYQEYLHSFTTVEDFRYLPFHKTVITLTKLGYREHRTFYEEDEFLNVKKQVEQLLNPT-VSAQIYYSQYF-KGTDPALWALAEREHGNVQQE 100
                  689*************************************************************.779999*****.99******************* PP

      DUF4464 100 lstiiFirdrnskgqeiSgYIDyeqrLkevk.kksksedwkaiFegkkrLlPkktdLsyynwktnkvtsndsdnyqviadnekgLlfkhkrDrkiinv 196
                  +stiiF+++  ++g++ SgYID+e +L++++ k  ++ dwka+Fe++k L+P+++d+ +y+wkt+k++ nd+dny+v+a++e+gL+f hk+D+k i+v
  NP_650260.1 101 ISTIIFLEISGRSGFSKSGYIDFEASLRNYRfKGPNAVDWKAVFEERKLLKPQPSDIVFYDWKTRKIFANDNDNYTVVAHPEHGLMFAHKGDHKNIPV 198
                  ************************************************************************************************** PP

      DUF4464 197 dpkaekpgd.nskrteiespkygqvvlYDHvvRrk 230
                   +k+ +p++ n++r++i+s+ yg ++lYDH+vR+k
  NP_650260.1 199 TTKK-NPFSsNVRRSMIRSNLYGFIILYDHHVRKK 232
                  5555.77777***********************97 PP



Or compare NP_650260.1 to CDD or PaperBLAST