PaperBLAST – Find papers about a protein or its homologs

 

Align XP_003054829.1 to PF14737 (DUF4470)

XP_003054829.1 has 552 amino acids

Query:       DUF4470  [M=97]
Accession:   PF14737.10
Description: Domain of unknown function (DUF4470)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-21   63.2   0.0    1.8e-21   62.4   0.0    1.4  1  XP_003054829.1  


Domain annotation for each sequence (and alignments):
>> XP_003054829.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   62.4   0.0   1.8e-21   1.8e-21       1      96 [.      11     132 ..      11     133 .. 0.91

  Alignments for each domain:
  == domain 1  score: 62.4 bits;  conditional E-value: 1.8e-21
         DUF4470   1 lwGntpaldllkll.pkn.........................egedlniLllgsgDlRnvlkTiasl..petysrklditlndsepevvaRnil 67 
                     +wG +paldl   + +++                         e+++l  Lllg++D+R+v++T+a++    ++++ l +++++ ++  +aR++l
  XP_003054829.1  11 FWGASPALDLKAAVsAARasaspeastsdetpsaktttgdddgERDPLTTLLLGTSDPRHVFTTLARSrrGADKDKALVFYVHEAHVVELARQVL 105
                     7**********999655599******99999999999988877777**********************98778999******************* PP

         DUF4470  68 lllillesddsleleeaaelllhlwysal 96 
                     l+++l++  d+l+ ++++e +l++wy++ 
  XP_003054829.1 106 LVSVLAS--DDLPPTDRTERILEIWYNCS 132
                     ******8..667889************85 PP



Or compare XP_003054829.1 to CDD or PaperBLAST