PaperBLAST – Find papers about a protein or its homologs

 

Align NP_001342660.1 to PF14951 (DUF4503)

NP_001342660.1 has 601 amino acids

Query:       DUF4503  [M=392]
Accession:   PF14951.10
Description: Domain of unknown function (DUF4503)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   6.5e-187  606.8   6.7   9.3e-187  606.3   6.7    1.2  1  NP_001342660.1  


Domain annotation for each sequence (and alignments):
>> NP_001342660.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  606.3   6.7  9.3e-187  9.3e-187       1     391 [.     208     588 ..     208     589 .. 0.99

  Alignments for each domain:
  == domain 1  score: 606.3 bits;  conditional E-value: 9.3e-187
         DUF4503   1 qDayGlFsevqlellllkddlkeyerkleGrsCllaGvkvlqrvtRgrtaglfsLidslWPPavplkapgksqsseevktalppPsfCyilsaee 95 
                     qDa+G+F+ev l+++l+k      +r+leG+sC+++Gvkvlq++tRgrt+glfsLidslWPP+++l++p+++q+s e+kt lppP fCyi+sa++
  NP_001342660.1 208 QDACGMFGEVFLNSTLWK------SRQLEGKSCSMSGVKVLQKATRGRTPGLFSLIDSLWPPVISLTEPSCGQPSGETKTYLPPPIFCYIFSAHP 296
                     9*****************......*********************************************************************** PP

         DUF4503  96 elgqvevieedsvsklylpPvvrtlreilqteeksarCsfvarviykrpqlkslllleqkeiWllvtdisLqekeeeeselprtlpvcvaasCvl 190
                     +lgq++ ie d++skly+pPvvr+l+eilqt+e+s+rCsf+arviy++pqlk+l  l+qkeiWllvtdi+Lq+++e++++lp+tlpv++a+sCvl
  NP_001342660.1 297 TLGQIDAIE-DHISKLYQPPVVRCLKEILQTNECSTRCSFYARVIYQKPQLKNL--LAQKEIWLLVTDITLQTQDERDHSLPKTLPVYIAPSCVL 388
                     ********9.99***************************************999..9************************************** PP

         DUF4503 191 dsevleaLksaaslsllFrDalreqgrivcvertvlelqkpllsvvsgaesaeLpgPvrlDeLdsetkvnsiCsvqGvvvgvdestafsWPvCdr 285
                     ++ev+e+L+  +s++llFrDa++++g+ivc+ertv++ qkpll+v s+  s++Lp+Pv+lDeL+++t+vnsiCsvqG+vv+vdestafsWPvCdr
  NP_001342660.1 389 GPEVVEELALLVSYNLLFRDAFKDNGQIVCIERTVILPQKPLLCVPSA--SCDLPSPVTLDELSALTPVNSICSVQGTVVDVDESTAFSWPVCDR 481
                     *********************************************988..9******************************************** PP

         DUF4503 286 CgsdrleqkpedrgalsCgdCssvvtsPvlkvhLevfldcssrpectvkvkLlqksisslLksaaledgsyevesvlgkevGllacyvrsvtkkp 380
                     Cg++rleqkped g++sCgdCs++v sP++++hL+vfldc++rpe+tvkvkLl++sis lL+saa+edgsyevesvlgke+G+l c+v+s+t+++
  NP_001342660.1 482 CGNGRLEQKPEDGGTFSCGDCSQLVLSPLQERHLHVFLDCPTRPESTVKVKLLESSISLLLMSAASEDGSYEVESVLGKEMGPLLCFVQSITTQQ 576
                     *********************************************************************************************** PP

         DUF4503 381 tsl.igleeiel 391
                     +s+ ++leeiel
  NP_001342660.1 577 SSCvVTLEEIEL 588
                     *99679****99 PP



Or compare NP_001342660.1 to CDD or PaperBLAST