PaperBLAST – Find papers about a protein or its homologs

 

Align SwissProt::A0JMY4 to PF14988 (DUF4515)

SwissProt::A0JMY4 has 531 amino acids

Query:       DUF4515  [M=206]
Accession:   PF14988.10
Description: Domain of unknown function (DUF4515)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------          -----------
    1.8e-27   82.7  41.6    1.8e-27   82.7  41.6    3.6  3  SwissProt::A0JMY4  


Domain annotation for each sequence (and alignments):
>> SwissProt::A0JMY4  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.8   0.4     0.022     0.022     152     179 ..      54      81 ..      21      84 .. 0.76
   2 !   82.7  41.6   1.8e-27   1.8e-27       5     206 .]      84     273 ..      80     273 .. 0.98
   3 ?   -8.6  16.5         1         1      55     123 ..     280     343 ..     274     384 .. 0.45

  Alignments for each domain:
  == domain 1  score: 0.8 bits;  conditional E-value: 0.022
            DUF4515 152 qalsefcrsikreNqeLqkeLlqllqet 179
                        + + ++ rs+ ++N++L k+  +l +++
  SwissProt::A0JMY4  54 VEYRDAARSLAQNNEDLTKQQYKLEKDM 81 
                        5677888888888888888877777765 PP

  == domain 2  score: 82.7 bits;  conditional E-value: 1.8e-27
            DUF4515   5 fLeyLkkkkeekekkiekLwkqyvqkkeeierrrqelaskyakqtseLqkqllqkkklqaslkkklkalrqvakikekqereiqtLeeekkk 96 
                        ++ +Lkk++ ek++ iekL ++++ +k+ ++++r++l++ y+kq+++L+++  qk ++ + ++ ++k +r++ + k + e+e++  +e +  
  SwissProt::A0JMY4  84 VIGFLKKQDLEKDELIEKLQQNLIAQKKSAQDEREKLVELYSKQIAHLEENYSQKTNEMQIIQSEFKLMREFRRQKVELEKELDEVKESLWR 175
                        6789**************************************************************************************** PP

            DUF4515  97 veaetaekdreahlqflkekalLekqleelkllelgerktrelkkKakalklaAkqalsefcrsikreNqeLqkeLlqllqetqkLeaiksk 188
                         +++++e+  +++ +f++ek++Lek++ e+k+++l+e+++ e           A+ +l e+ +s+++eN  L+++  ++l+e++ +++ k+ 
  SwissProt::A0JMY4 176 ANQDHKETLARMERRFFEEKQRLEKEA-EKKIMMLAEKAHSE-----------AIIQLDEARKSVFKENVRLKEAFSYHLKEMKDIKKSKKM 255
                        ***************************.**************...........*************************************** PP

            DUF4515 189 LeerkqrlkeqqwyleaL 206
                         e  k  l ++++ +++L
  SwissProt::A0JMY4 256 QEDAKLHLLQEKETNDLL 273
                        *************99987 PP

  == domain 3  score: -8.6 bits;  conditional E-value: 1
            DUF4515  55 qllqkkklqaslkkklkalrqvakikekqereiqtLeeekkkveaetaekdreahlqflkekalLekql 123
                        q  qkk ++++l++++kal+     +   e+e ++  +e+   +a ++e+  +++lq l++  ++ k+ 
  SwissProt::A0JMY4 280 QVSQKKVQIQELQQNVKALECA-LERMTMEMEKDAQGKEH---QALLQEQAGNVELQKLQKVLHM-KER 343
                        5566666666666666666532.22222233222222222...2223333333333333322222.111 PP



Or compare SwissProt::A0JMY4 to CDD or PaperBLAST