PaperBLAST – Find papers about a protein or its homologs

 

Align SwissProt::G2TRJ5 to PF15055 (DUF4536)

SwissProt::G2TRJ5 has 81 amino acids

Query:       DUF4536  [M=47]
Accession:   PF15055.10
Description: Domain of unknown function (DUF4536)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------          -----------
    2.2e-14   39.8   2.0    3.2e-14   39.3   1.3    1.7  2  SwissProt::G2TRJ5  


Domain annotation for each sequence (and alignments):
>> SwissProt::G2TRJ5  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.3   1.3   3.2e-14   3.2e-14       1      40 [.      25      68 ..      25      75 .. 0.80
   2 ?   -0.6   0.1     0.094     0.094      11      21 ..      69      79 ..      65      81 .] 0.78

  Alignments for each domain:
  == domain 1  score: 39.3 bits;  conditional E-value: 3.2e-14
            DUF4536  1 dClsCRllSGsGLigaGaYvyvqArr....rlkqggkptmgtia 40
                       dCl+CRl+++++++g+G+Y y q+r     ++++++++++++ a
  SwissProt::G2TRJ5 25 DCLPCRLVGAGAFTGLGIYAYSQSRIplntPNYKLKRFGILGMA 68
                       9************************9555555566777777766 PP

  == domain 2  score: -0.6 bits;  conditional E-value: 0.094
            DUF4536 11 sGLigaGaYvy 21
                        G+i  G+Y +
  SwissProt::G2TRJ5 69 YGFILTGVYRL 79
                       68999999965 PP



Or compare SwissProt::G2TRJ5 to CDD or PaperBLAST