NP_055990.1 has 2754 amino acids
Query: DUF4704 [M=486]
Accession: PF15787.9
Description: Neurobeachin/BDCP, DUF4704 alpha solenoid region
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
7.5e-32 96.7 0.0 1.6e-30 92.4 0.1 2.4 2 NP_055990.1
Domain annotation for each sequence (and alignments):
>> NP_055990.1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 92.4 0.1 1.6e-30 1.6e-30 18 296 .. 877 1169 .. 873 1172 .. 0.90
2 ! 1.1 0.0 0.0073 0.0073 398 443 .. 1251 1297 .. 1239 1311 .. 0.85
Alignments for each domain:
== domain 1 score: 92.4 bits; conditional E-value: 1.6e-30
DUF4704 18 vvthsiqsilesvGGiqvLfPLfsqldqaeedeq.lege...........................seadeklcatlleliaelleesetnqqqll 85
v t ++++ +++vGG+ L+PL++++ ++ ++++ + e + + + +a l ++ + l+++ nq+ l+
NP_055990.1 877 VETWDVKDVVNCVGGMGALLPLLERVAAQPKEAEaGPAEthdlvgpeltsghntqglvlplgksseERMERNAVAAFLLMLRNFLQGHMVNQESLV 972
77899********************97665554314444789********************9987677778889999999*************** PP
DUF4704 86 rlkGflvlsflLqsvspkhLtlevlsalksllkvlkslanselLlkdlvdsillnpklWiytdyeVQkeLysyLatdfvsdkkiltnlrrvstVlr 181
+++G+++++ lL +v++ + ++vl + + l++++ +s +Ll l +++l+n++lW +d++V +y+++++ ++ ++lr+ +V+
NP_055990.1 973 QCQGPAIIGALLRKVPSWAMDMNVLMSAQLLMEQVAA-EGSGPLLYLLYQHLLFNFHLWTLSDFAVRLGHIQYMSSIVREHR---QKLRKKYGVQF 1064
*********************************9965.47*************************************99997...99********* PP
DUF4704 182 lldilkqfYwvenaksksgvtskslleeRp.sqeeilklrallLslieqlvrksseisesevk...alinyletvqddenvedvLelvirllseks 273
+ld+l+ Y + eRp + +++ ++ lL l+++ +++s s+++v+ +++++l+ + dd + L+l+++ll +
NP_055990.1 1065 ILDALRTHYSPQ--------------RERPlAADDLRTVQTSLLGLAREFLVRS--LSADDVQvtqTMLSFLAATGDDGQAVGALDLLLALLHGSL 1144
*********965..............367767899*******************..999999633379************************9996 PP
DUF4704 274 ..asflealdskggieiflkLLsre 296
+s++ l + g +e++l LL r+
NP_055990.1 1145 vqESLAVFLLEPGNLEVLLALLVRP 1169
657777788888999*****99875 PP
== domain 2 score: 1.1 bits; conditional E-value: 0.0073
DUF4704 398 es.ielrkkiLsdllvLlksnrenrrallqmsvWqewLvalaklaei 443
++ +++r +i +l L+ +++ +r l +++Wq+ L+ l l+ +
NP_055990.1 1251 QAdLSVRLDICRQLFHLIYGQPDVVRLLARQAGWQDVLTRLYVLEAA 1297
3347899*******************************998877665 PP
Or compare NP_055990.1 to CDD or PaperBLAST