XP_042903870.1 has 3172 amino acids
Query: DUF4704 [M=486]
Accession: PF15787.9
Description: Neurobeachin/BDCP, DUF4704 alpha solenoid region
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.5e-203 661.8 16.0 3.5e-203 661.8 16.0 1.7 2 XP_042903870.1
Domain annotation for each sequence (and alignments):
>> XP_042903870.1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -3.9 0.0 0.24 0.24 371 407 .. 66 102 .. 52 111 .. 0.78
2 ! 661.8 16.0 3.5e-203 3.5e-203 2 486 .] 429 914 .. 428 914 .. 0.99
Alignments for each domain:
== domain 1 score: -3.9 bits; conditional E-value: 0.24
DUF4704 371 epekssklelPqilkviakllsqskdsesielrkkiL 407
+e + ++ Pq ++ +++ll ++ +s ++e+ ++
XP_042903870.1 66 DMELNFVIQQPQNIVHMLDLLDHCPSSLQAEVWSVFI 102
5666677999999999999999999988777766665 PP
== domain 2 score: 661.8 bits; conditional E-value: 3.5e-203
DUF4704 2 advhspealilngvqlvvthsiqsilesvGGiqvLfPLfsqldqaeedeqlegeseadeklcatlleliaelleesetnqqqllrlkGflvlsfl 96
++vh+p+al+l++v++++t si+s+l+s+GGiqvLfPL+ qld ++ l++++e++++ c+tl++++++l+e+s+t+qq+++++k flv+s+l
XP_042903870.1 429 FFVHTPHALMLQDVKAITTYSIHSTLNSIGGIQVLFPLLGQLDIPTGIT-LPKNQEKKPTTCSTLIGFVCDLVENSPTVQQHMIQNKAFLVISYL 522
689******************************************9997.555569*************************************** PP
DUF4704 97 LqsvspkhLtlevlsalksllkvlksl..anselLlkdlvdsillnpklWiytdyeVQkeLysyLatdfvsdkkiltnlrrvstVlrlldilkqf 189
Lq++s++h+t evl ++++l+k+l+++ +nselLlk+l+d+il+np+lWiyt+++VQ++L++yLatdf++d++i++n+rr+stVl+++++lk++
XP_042903870.1 523 LQKASRDHITEEVLLSFLNLTKYLVTVnnSNSELLLKQLLDHILFNPALWIYTPTVVQTKLFTYLATDFLADTQIYSNVRRISTVLQTMHTLKYY 617
***************************6666**************************************************************** PP
DUF4704 190 YwvenaksksgvtskslleeRpsqeeilklrallLslieqlvrksseisesevkalinyletvqddenvedvLelvirllseksasflealdskg 284
Ywv+n+++ksg+t+k+++++Rp+q++i+++ra++L +++ql++k+++++e+e+++++nyl+tv++den++dvL+++++l+se++as+++a+d k+
XP_042903870.1 618 YWVVNPRNKSGITPKGIDGPRPNQNDIMSIRAYILLFLKQLILKGNGVKEDELQSILNYLTTVHEDENLHDVLQMLMSLMSEHPASMVPAFDIKN 712
*********************************************************************************************** PP
DUF4704 285 gieiflkLLsreseaiRllaLkllgklllrspvkrksevmeaknlfsliserLllfseeltdktynvLfevllekaspkivlekhsepeksskle 379
gi++++kLL++++e+iRl+aLkllg++l+rs++krk++vm+++nl++l+++rLll+s++++++tynvL+e+l+e++s +i+++kh epe++++le
XP_042903870.1 713 GIRTVFKLLASTNEVIRLQALKLLGYFLSRSTHKRKHDVMGPHNLYMLLADRLLLHSDHISLSTYNVLYEILTEHVSSQILYQKHPEPESHYRLE 807
*********************************************************************************************** PP
DUF4704 380 lPqilkviakllsqskdses.ielrkkiLsdllvLlksnrenrrallqmsvWqewLvalaklaeikeeeeseikelvielfkvLlvhalktekgG 473
+P+ilkvia+l++qsk +e+ +e +k++Lsd++ L+++n+enrr++lqmsvWqewL+a+a++++ +++e ++++++v++lf++Ll+ha+k+e+gG
XP_042903870.1 808 NPMILKVIATLIRQSKTCEElMETKKLFLSDMTLLCNNNKENRRTVLQMSVWQEWLIAMAYIHPQNADE-QKLSDMVYSLFRMLLHHAIKYEYGG 901
*********************************************************************.************************* PP
DUF4704 474 wrvlvdtlailhs 486
wrv+vdtlai+hs
XP_042903870.1 902 WRVWVDTLAIVHS 914
***********96 PP
Or compare XP_042903870.1 to CDD or PaperBLAST