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Align SwissProt::Q5HYW3 to PF16297 (DUF4939)

SwissProt::Q5HYW3 has 569 amino acids

Query:       DUF4939  [M=112]
Accession:   PF16297.9
Description: Domain of unknown function (DUF4939)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------          -----------
      1e-16   47.1   0.2    5.4e-16   44.8   0.0    2.3  3  SwissProt::Q5HYW3  


Domain annotation for each sequence (and alignments):
>> SwissProt::Q5HYW3  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   44.8   0.0   5.4e-16   5.4e-16      28     103 ..     153     228 ..     138     231 .. 0.92
   2 ?   -3.2   0.0       0.4       0.4       9      28 ..     300     320 ..     294     322 .. 0.67
   3 ?   -2.8   0.3      0.32      0.32      92     104 ..     366     378 ..     363     386 .. 0.73

  Alignments for each domain:
  == domain 1  score: 44.8 bits;  conditional E-value: 5.4e-16
            DUF4939  28 pelfdGeserlpefivqtlsymlvdektfssdalkvaflitrlkGralewvmpyiqkdspllnnyraflnemkeef 103
                         e f+G+   l ef++q  +++  +e +f   a +vafli+ ++G+a++w++   q+ spl  n+  fl+e+++ef
  SwissProt::Q5HYW3 153 IEPFSGDPVYLAEFLMQLETFIADHEVHFPGGAERVAFLISFFTGEAKDWAISVTQEGSPLHANFPRFLDEIRKEF 228
                        357**********************************************************************999 PP

  == domain 2  score: -3.2 bits;  conditional E-value: 0.4
            DUF4939   9 vlmerarl.rkrrwrnpipfp 28 
                        +++e  ++ rk r   pip p
  SwissProt::Q5HYW3 300 LILECVEIeRKVRVPKPIPLP 320
                        555666655667778899988 PP

  == domain 3  score: -2.8 bits;  conditional E-value: 0.32
            DUF4939  92 yraflnemkeefG 104
                         raf +emke+  
  SwissProt::Q5HYW3 366 MRAFQQEMKEKEE 378
                        68999***98754 PP



Or compare SwissProt::Q5HYW3 to CDD or PaperBLAST