PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS352855 to PF16315 (DUF4955)

VIMSS352855 has 868 amino acids

Query:       DUF4955  [M=149]
Accession:   PF16315.9
Description: Domain of unknown function (DUF4955)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.5e-78  246.2   0.8    1.5e-77  245.1   0.8    1.6  1  VIMSS352855  


Domain annotation for each sequence (and alignments):
>> VIMSS352855  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  245.1   0.8   1.5e-77   1.5e-77       1     149 []     716     867 ..     716     867 .. 0.99

  Alignments for each domain:
  == domain 1  score: 245.1 bits;  conditional E-value: 1.5e-77
      DUF4955   1 GqehacGvskksvGtvilkvklgadacfeshatqPratLiDnvegGflksraGGdeeelPnhlkdLvlWnlkvtgtseeekkfkfwsaekkywkllpP 98 
                  Gq+h+cGvsk+svGtv+++v++g+dacfeshatqPratLiDn++gG++++raGGde+e+Pnhl dL+lWnl+vtgt++++++f++ws+++++wk++pP
  VIMSS352855 716 GQFHGCGVSKPSVGTVLWNVTWGNDACFESHATQPRATLIDNCSGGLVYYRAGGDENEVPNHLGDLTLWNLNVTGTDSHASNFAWWSDSDTWWKIFPP 813
                  9************************************************************************************************* PP

      DUF4955  99 iivGlhGkavtf...eedevkleeslGekvePesLyeaqlqerLgkvPswlkel 149
                  i+vG+hG++v+f   e+++v++ees+G+kv+PesLyeaql+erLg+vP wl++l
  VIMSS352855 814 IVVGTHGMNVKFsgkEQQQVTYEESTGMKVSPESLYEAQLRERLGYVPGWLNAL 867
                  ************998899*********************************987 PP



Or compare VIMSS352855 to CDD or PaperBLAST