PaperBLAST – Find papers about a protein or its homologs

 

Align SwissProt::P0C2H4 to PF16332 (DUF4962)

SwissProt::P0C2H4 has 958 amino acids

Query:       DUF4962  [M=476]
Accession:   PF16332.9
Description: Domain of unknown function (DUF4962)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------          -----------
    1.6e-11   29.3   4.7    1.6e-11   29.3   4.7    2.2  3  SwissProt::P0C2H4  


Domain annotation for each sequence (and alignments):
>> SwissProt::P0C2H4  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.7   0.0     0.043     0.043     131     177 ..      37      85 ..      23     101 .. 0.79
   2 !   29.3   4.7   1.6e-11   1.6e-11     254     414 ..     149     314 ..     109     354 .. 0.81
   3 ?   -1.6   0.1      0.04      0.04     224     253 ..     779     808 ..     734     814 .. 0.72

  Alignments for each domain:
  == domain 1  score: -1.7 bits;  conditional E-value: 0.043
            DUF4962 131 aklkksHPrilllkkdwedfikrnkdnpea..kayikkaekllkkplek 177
                        + + +sHP ++  +++  ++  r ++++e+  + + +  +++l++ple 
  SwissProt::P0C2H4  37 NANYDSHPMLYFSRAEVAELQLRAASSHEHiaARLTEAVNTMLSSPLEY 85 
                        556678***********99999999988862155677778899999975 PP

  == domain 2  score: 29.3 bits;  conditional E-value: 1.6e-11
            DUF4962 254 FnaatllsllalaYDsfYdllteeekkllkkeikergkkiyk.efvnrlenhiadnHvWqmtlRiltlaalav.vgelpeAdkWldyvYevW 343
                           a  l   a+aYD  Y++l+++++++++++i + +  +y+ ++      +   nH     +  lt + + +  g l+eA  W++ v  + 
  SwissProt::P0C2H4 149 VPLAHSLVGFATAYDFLYNYLSKTQQEKFLEVIANASGYMYEtSYRRGWGFQYLHNHQPTNCMALLTGSLVLMnQGYLQEAYLWTKQVLTIM 240
                        5567788899*******************************7368999*********99999988886654442578*************** PP

            DUF4962 344 vaRfPvL..nkDGgWHngdsYfkvnlrtlievpalyselsGvdfFsdpWyknlalyvlysq.ppfsksagnGds 414
                           +  L   +DG+ ++g +Y +  +r+l +   l ++   +++F +pW+k    ++  +  p f   ++  ds
  SwissProt::P0C2H4 241 EKSLVLLreVTDGSLYEGVAYGSYTTRSLFQYMFLVQRHFDINHFGHPWLKQHFAFMYRTIlPGFQRTVAIADS 314
                        ****9998789****************************************99888654441445555555555 PP

  == domain 3  score: -1.6 bits;  conditional E-value: 0.04
            DUF4962 224 LtkDkkyakeaikrllellsmdkskavkgD 253
                           Dk+ ++eai+r+  +++ ++++++k+ 
  SwissProt::P0C2H4 779 RFSDKRQTEEAIDRIFAISQQQQQQQSKSK 808
                        3569999**********9999987777655 PP



Or compare SwissProt::P0C2H4 to CDD or PaperBLAST